Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016-
05-09] 879 sequences; 32,692,340 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq249 120 3e-22
seq133 114 1e-20
seq404 105 8e-18
>seq249
Length=46353
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||||||| | || ||||||||| || ||||||||||| || || || | || ||
Sbjct 8323 ACCAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTACGGCCATCCTCC 8264
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||||||||| || |||| |||||||| || | || | | ||||||||| |
Sbjct 8263 AGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGAGGGATACCCTCCTTGTCTTGG 8204
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|||||| |||| | | | || ||| ||||| || || | ||||||||||||
Sbjct 8203 ATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCGACTTCTAGGGTGATGGTTTTG 8144
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || || || ||||| ||||||||
Sbjct 8143 CCAGTGAGAGTCTTGACAAAAATTTGCAT 8115
Score = 120 bits (132), Expect = 3e-22
Identities = 167/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419
||| | |||||| | | ||||| |||||||| | ||| |||||||||||| |||||
Sbjct 8576 TTACTGGCCTCCACGCAGACGCAGAACCAGATGTAGGGTAGACTCCTTTTGGATGTTGTA 8517
Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479
||| || ||||| || | || || | |||||||||||| || |||| |||||||| ||
Sbjct 8516 GTCAGAGAGAGTACGACCATCCTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATC 8457
Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539
| || | | |||||| || ||||||| |||| | | | || || ||
Sbjct 8456 TGGGGGAATACCCTCCTTATCTTGGATCTTCGATTTGACATTGTCAATAGTATCAGAAGA 8397
Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || | |||||||||||||| || || || || || |||||||||||
Sbjct 8396 CTCAACCTCAAGGGTGATGGTTTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 8343
Score = 100 bits (110), Expect = 3e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
||||| || | ||| |||||| ||||| ||||||||||| || ||||| |||| ||
Sbjct 7802 ACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCCTCA 7743
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| ||||| |||||||| || | ||||||||||| | || | | |||||| |||
Sbjct 7742 AGTTGCTTTCCGGCGAAAATTAGACGCTGCTGGTCTGGGGGAATACCCTCCTTATCCTGA 7683
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|||||| ||||| | | | |||||| || || || || | |||||||| |||
Sbjct 7682 ATCTTCGACTTGACATTGTCGATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTG 7623
Query 46565 CCCGT 46569
|| ||
Sbjct 7622 CCGGT 7618
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||||||| | || |||||||||||| |||||||| || || || || | || ||
Sbjct 8095 ACCAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGGCCATCCTCC 8036
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||||||||| || |||| |||||||| || | || | | ||||||||| |
Sbjct 8035 AGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCCGGAGGGATACCCTCCTTGTCTTGG 7976
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|||||| |||| | | | || ||| ||||| || || | |||||||| ||
Sbjct 7975 ATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCGACTTCTAGGGTGATGGTCTTT 7916
Query 46565 CCCGTCAGCGTTTTAAC 46581
|| || || ||||| ||
Sbjct 7915 CCGGTAAGGGTTTTGAC 7899
>seq133
Length=77988
Score = 114 bits (126), Expect = 1e-20
Identities = 136/182 (75%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||||||||| |||||||| || | |||||| | || || ||||||||||| ||||| |
Sbjct 32184 CCTTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 32243
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
||| |||||| ||||| | || | || ||||||||| |||||| ||||| ||| |
Sbjct 32244 TCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCTTGGATCTTGGACTTGA-CGTTG 32302
Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | |||||| || || || |||| || ||||| || |||||||| || || ||
Sbjct 32303 TCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 32362
Query 46583 AA 46584
||
Sbjct 32363 AA 32364
>seq404
Length=24851
Score = 105 bits (116), Expect = 8e-18
Identities = 152/213 (71%), Gaps = 1/213 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||| ||| ||| |||| ||||| ||||||||||| || ||||| | || ||
Sbjct 18481 ACAAGATGATATG-ACTGACCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCT 18423
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| ||||| |||| |||||| || || | || | || |||||| ||| |
Sbjct 18422 AGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTATCCTGG 18363
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| ||||| | | | ||||| || || || || | ||||| || ||
Sbjct 18362 ATCTTAGACTTGACATTGTCGATGGTGTCTGAGGACTCAACCTCAAGGGTGATCGTCTTA 18303
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
||||| || || || || || || ||||| |||
Sbjct 18302 CCCGTAAGGGTCTTGACGAAAATCTGCATCTTG 18270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565232189443080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |