Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq298 113 6e-20 seq131 86.0 8e-12 >seq298 Length=37418 Score = 113 bits (124), Expect = 6e-20 Identities = 223/326 (68%), Gaps = 3/326 (1%) Strand=Plus/Minus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 16124 || || || || || ||||| || ||||| ||| |||| ||| || |||| ||| Sbjct 33103 GCGTCGATTTCGTCGATGAAAACAATGCACGGTGAGTTTTTGCGGGCTGTCGCAAACAGA 33044 Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 16183 || ||||||||| | ||| ||||| |||||||| |||||||| | | | || ||| Sbjct 33043 TCGCGTACACGCGAAGGGCCGACACCGACAAACATTTCCACAAACTCGGAGCCGCTGACA 32984 Query 16184 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243 || | ||| || || ||| || || ||| | || || ||||| |||||||| || Sbjct 32983 CTGAA-GAAAGGTACGCCAGACTCGCCGGCAGTCGCCTTAGCCAGAAGTGTCTTACCGGT 32925 Query 16244 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCT 16303 || || ||| | |||| |||||| || ||||||||||| ||| | || | | Sbjct 32924 GCCAGGAGGACCGGACAGGATGGCACCGCGGGGAATCTTGGCACCAAGACGCAAAAACTT 32865 Query 16304 CTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCC 16363 |||||| | ||| ||||| | ||||| ||| | || |||| || | || || || Sbjct 32864 CTCAGGCTTCTTGAGAAACTGCACAAACTCCATGATCTCCACTTTAGCCTCATCCATACC 32805 Query 16364 CTCAACATCGGTAAAC-CGAGTTTCA 16388 ||||||| | |||| || ||||| Sbjct 32804 GGCAACATCTGCAAACTTGACTTTCA 32779 >seq131 Length=78510 Score = 86.0 bits (94), Expect = 8e-12 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 176018 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 176077 ||||| |||||| ||||| | || || | ||||| || || | | ||||| | Sbjct 71113 GCATCGGAACCACCGGCAAGACGAGATCCGAAGTTACCACTAGGTTCCAAACAATTGACA 71054 Query 176078 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 176137 |||||||| |||| | ||| | || || ||| ||| || | | ||||| ||||| Sbjct 71053 TTGTTTGAGCCCACGAAGTTCTGAGCTAAACTGATAATAGTCTGCTGTAGAGACGCTTCA 70994 Query 176138 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCA 176197 || || ||||| ||| ||| | | |||| | | || |||| | || ||||| || Sbjct 70993 CCATGTTGGTAGGCAGTCTGGCCAGAGACATAACCAGCTAACTCAACGACCTTCATATCT 70934 Query 176198 TCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 176257 | | | || | | |||||| ||||| |||||||||||||| |||||| || ||| Sbjct 70933 TTTATTATGTTACTCTTGAAACAGGCGTAGATAACCTTGCGTTGACCAGGCTTTAGGCCA 70874 Query 176258 TC 176259 || Sbjct 70873 TC 70872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620735579592880