Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq53 104 3e-17 >seq53 Length=118516 Score = 104 bits (114), Expect = 3e-17 Identities = 363/566 (64%), Gaps = 3/566 (1%) Strand=Plus/Plus Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 |||| || || ||||| ||| || || ||||| || | | |||| || |||||| Sbjct 90035 AACAACAGGCAGGCAAAGTCAGTGTGCAGACCCTCATCACGAGAAATCAGCTCGTTAGAA 90094 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || || | || |||||||| || | || | ||| || || || ||||| | |||| Sbjct 90095 AAGGTCAGGCCGGGCATCAGACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAGGCTCCA 90154 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 |||||||| || ||||| || || |||||||| | ||| | | || || | | || Sbjct 90155 GAAAAGAAGATGCCTTCGACAGCAGCAAAAGCGATTAGGCGCTGAGCAAAAGTTGATTCT 90214 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191 | | ||||| || || ||||| || || || || || || || || || Sbjct 90215 CTGTCGCAGATCCACTTGAGAGCCCAGTCGGCTTTGCGGCGTATGCAGGGAATGGTGTCA 90274 Query 19192 ATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAA 19251 |||| || || || ||| | |||| | | || |||| || | ||| ||||| ||| Sbjct 90275 ATAGCGTTGAACAGGTACGTGCGCTGGGCAGGCTCCTTAATGTAAGTATCGATCAACAAA 90334 Query 19252 CTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCT 19311 ||| | || || || || || || || ||||| || || || || || | || Sbjct 90335 GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCAACGAGCC 90394 Query 19312 TCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCA 19371 || | ||||| || || | | | || | || |||| || || || ||||| |||||| Sbjct 90395 TCAGGGATCTGGACCTCGCCAGAGAAACGCTCAACCAGGTTCTCGTTGACTATGCCATCA 90454 Query 19372 CTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTA---AT 19428 || ||||| || || | | || || || | | || || ||| | Sbjct 90455 GAGGCAGCAAAGAAGGCCAGAATGTGAGAGATGAAGTACTGCTCGTCCTTGGTAAGCCGG 90514 Query 19429 GTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCC 19488 | ||||| || | | |||||| |||| ||| | || ||| | ||||| || || ||| Sbjct 90515 TTGTTCCAGTCGTGGAGATCTTTGGATAGATCAATCTCCTCAGCAGTCCAGAACGAGGCC 90574 Query 19489 TCTGCTTTTTTATACATGTTCCATAT 19514 || || || || ||||| | ||| || Sbjct 90575 TCAGCCTTCTTGTACATCTGCCAGAT 90600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562102623829560