Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016-
05-09] 879 sequences; 32,692,340 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq249 100 2e-15
seq60 87.8 1e-11
>seq249
Length=46353
Score = 100 bits (110), Expect = 2e-15
Identities = 158/222 (71%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314
||||| || || ||||| |||||| || ||||| || ||||| |||| ||||| |
Sbjct 8560 AGACGCAGAACCAGATGTAGGGTAGACTCCTTTTGG--ATGTTGTAGTCAGAGAGAGTAC 8503
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
||| || | || || ||||||||||| || | |||||||| || ||||| || |
Sbjct 8502 GACCATCCTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGGGGAATACCCT 8443
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGA 563433
| |||||||| || || ||| || ||||| ||||||| || | | || ||
Sbjct 8442 CCTTATCTTGGATCTTCGATTTGACATTGTCAATAGTATCAG-AAGACTCAACCTCAAGG 8384
Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| | ||||| ||||| ||||| || ||||| |||||||||
Sbjct 8383 GTGATGGTTTTGCCAGTGAGAGTCTTGACGAAGATTTGCATA 8342
Score = 91.5 bits (100), Expect = 1e-12
Identities = 156/222 (70%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314
||||| || || ||||| || || ||| |||| ||| ||||| || | || || |
Sbjct 8332 AGACGAAGAACCAGATGGAGAGTGGACTCCTTTTG--AATGTTGTAGTCGGAGAGGGTAC 8275
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
||| || || || || ||||||||||| || | |||||||| ||||| || || |
Sbjct 8274 GGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGAGGGATACCCT 8215
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433
| || ||||| || || ||| || ||||| ||||| | | || | | ||| ||
Sbjct 8214 CCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGAG-GATTCGACTTCTAGG 8156
Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| | ||||| ||||| ||||| || || ||||||||||||
Sbjct 8155 GTGATGGTTTTGCCAGTGAGAGTCTTGACAAAAATTTGCATA 8114
>seq60
Length=113822
Score = 87.8 bits (96), Expect = 1e-11
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
||||| || || || || || || | || ||||||||||| || |||||||| |||
Sbjct 50343 ACTGTTCCCGCCTACTTCAACGATGCCCAGCGTCAAGCTACCAAGGATGCTGGCATCATT 50402
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528
||||| || || |||| |||||| |||| || || |||||||| || | || || ||
Sbjct 50403 GCTGGTCTGAACATTCTCCGTATTGTCAACGAGCCCACTGCTGCCGCCATCGCCTACGGT 50462
Query 550529 CTTGATAA 550536
||||||||
Sbjct 50463 CTTGATAA 50470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029249514515710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |