Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq249 100 2e-15 seq60 87.8 1e-11 >seq249 Length=46353 Score = 100 bits (110), Expect = 2e-15 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| || || ||||| |||||| || ||||| || ||||| |||| ||||| | Sbjct 8560 AGACGCAGAACCAGATGTAGGGTAGACTCCTTTTGG--ATGTTGTAGTCAGAGAGAGTAC 8503 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||| || | || || ||||||||||| || | |||||||| || ||||| || | Sbjct 8502 GACCATCCTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGGGGAATACCCT 8443 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGA 563433 | |||||||| || || ||| || ||||| ||||||| || | | || || Sbjct 8442 CCTTATCTTGGATCTTCGATTTGACATTGTCAATAGTATCAG-AAGACTCAACCTCAAGG 8384 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | ||||| ||||| ||||| || ||||| ||||||||| Sbjct 8383 GTGATGGTTTTGCCAGTGAGAGTCTTGACGAAGATTTGCATA 8342 Score = 91.5 bits (100), Expect = 1e-12 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| || || ||||| || || ||| |||| ||| ||||| || | || || | Sbjct 8332 AGACGAAGAACCAGATGGAGAGTGGACTCCTTTTG--AATGTTGTAGTCGGAGAGGGTAC 8275 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||| || || || || ||||||||||| || | |||||||| ||||| || || | Sbjct 8274 GGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGAGGGATACCCT 8215 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433 | || ||||| || || ||| || ||||| ||||| | | || | | ||| || Sbjct 8214 CCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGAG-GATTCGACTTCTAGG 8156 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | ||||| ||||| ||||| || || |||||||||||| Sbjct 8155 GTGATGGTTTTGCCAGTGAGAGTCTTGACAAAAATTTGCATA 8114 >seq60 Length=113822 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || || || | || ||||||||||| || |||||||| ||| Sbjct 50343 ACTGTTCCCGCCTACTTCAACGATGCCCAGCGTCAAGCTACCAAGGATGCTGGCATCATT 50402 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| || || |||| |||||| |||| || || |||||||| || | || || || Sbjct 50403 GCTGGTCTGAACATTCTCCGTATTGTCAACGAGCCCACTGCTGCCGCCATCGCCTACGGT 50462 Query 550529 CTTGATAA 550536 |||||||| Sbjct 50463 CTTGATAA 50470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029249514515710