Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016-
05-09] 879 sequences; 32,692,340 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq249 123 2e-22
seq170 96.9 2e-14
seq60 89.7 3e-12
>seq249
Length=46353
Score = 123 bits (136), Expect = 2e-22
Identities = 162/221 (73%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608
||| ||||| || || ||||| || || ||| |||| ||| || || || | ||
Sbjct 8336 ACGCAGACGAAGAACCAGATGGAGAGTGGACTC-CTTTTGAATG-TTGTAGTCGGAGAGG 8279
Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668
|| | | ||| || || ||||| || |||||||| ||||| || ||||| ||||| ||
Sbjct 8278 GTACGGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGAGGGATA 8219
Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728
|| ||||||||||| ||||| ||||||| ||||||||||| | | | |||
Sbjct 8218 CCCTCCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCGACTTCT 8159
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || ||||| || ||||||||||| || ||||||||
Sbjct 8158 AGGGTGATGGTTTTGCCAGTGAGAGTCTTGACAAAAATTTG 8118
Score = 120 bits (132), Expect = 2e-21
Identities = 160/220 (73%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| ||||| || || ||||| || ||| || || | || || |||| |||||
Sbjct 8564 ACGCAGACGCAGAACCAGATGTAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGT 8505
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| ||| || | ||||| || |||||||| ||||| || ||||| || ||||| ||
Sbjct 8504 ACGACCATCCTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGGGGAATACC 8445
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
||||| ||||| ||||| ||||||| ||||||||||||| | | || ||||
Sbjct 8444 CTCCTTATCTTGGATCTTCGATTTGACATTGTCAATAGTATCAGAAGACTCAA-CCTCAA 8386
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|||| || ||||| || ||||||||||| ||||| |||||
Sbjct 8385 GGGTGATGGTTTTGCCAGTGAGAGTCTTGACGAAGATTTG 8346
Score = 102 bits (112), Expect = 5e-16
Identities = 152/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608
||| ||||| || || ||||| || || ||| ||| || || || |||| ||
Sbjct 8108 ACGCAGACGAAGAACCAGATGGAGAGTGGACTCCTTTTGGATG--TTGTAGTCAGAGAGG 8051
Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668
|| | | ||| || || ||||| || |||||||| ||||| || ||||| ||||| ||
Sbjct 8050 GTACGGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCCGGAGGGATA 7991
Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728
|| ||||||||||| ||||| ||||||| ||||||||||| | | | |||
Sbjct 7990 CCCTCCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCGACTTCT 7931
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762
||||| || || || ||||| || || || ||||
Sbjct 7930 AGGGTGATGGTCTTTCCGGTAAGGGTTTTGACGA 7897
>seq170
Length=65362
Score = 96.9 bits (106), Expect = 2e-14
Identities = 169/241 (70%), Gaps = 4/241 (2%)
Strand=Plus/Plus
Query 474638 GGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAA 474697
|| || || || || ||| | || || | || || || |||||| | ||| |||
Sbjct 45996 GGCGAGACCAAGCAGTTTACCCCCGAGGAGATCTCCTCTATGGTTCTGATCAAGATGCGT 46055
Query 474698 CAAACCGC-GAGCTCATATCTTGG-ACAAGAAGTAACTGATGCAGTAATTACTGTTCCAG 474755
| ||||| ||| || || ||||| || | |||| | || || || |||||||| |
Sbjct 46056 GAGACCGCTGAG-TCGTACCTTGGTACCACCGTTAACA-ACGCTGTTATCACTGTTCCTG 46113
Query 474756 CATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTA 474815
| || || || |||||||| ||||| || || || || | || ||||| ||||| |
Sbjct 46114 CCTACTTCAACGATTCTCAGCGTCAGGCTACCAAGGACTCTGGTCTTATTGCCGGTCTGA 46173
Query 474816 ATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGA 474875
|||| || ||||| ||||| || || || || || || |||| || |||||||||||||
Sbjct 46174 ATGTCTTGCGTATCATTAACGAGCCCACTGCCGCTGCCATTGCCTACGGTCTTGATAAGA 46233
Query 474876 A 474876
|
Sbjct 46234 A 46234
>seq60
Length=113822
Score = 89.7 bits (98), Expect = 3e-12
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803
|||||||||| || || || || ||| | || |||||||| || || ||||| || | |
Sbjct 50341 TTACTGTTCCCGCCTACTTCAACGATGCCCAGCGTCAAGCTACCAAGGATGCTGGCATCA 50400
Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863
|||| ||||| || || | |||||| | || || || || || ||||| | || || |
Sbjct 50401 TTGCTGGTCTGAACATTCTCCGTATTGTCAACGAGCCCACTGCTGCCGCCATCGCCTACG 50460
Query 474864 GTCTTGATAAGA 474875
||||||||||||
Sbjct 50461 GTCTTGATAAGA 50472
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268141495425092
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |