Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq249 123 2e-22 seq170 96.9 2e-14 seq60 89.7 3e-12 >seq249 Length=46353 Score = 123 bits (136), Expect = 2e-22 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||| ||||| || || ||||| || || ||| |||| ||| || || || | || Sbjct 8336 ACGCAGACGAAGAACCAGATGGAGAGTGGACTC-CTTTTGAATG-TTGTAGTCGGAGAGG 8279 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | | ||| || || ||||| || |||||||| ||||| || ||||| ||||| || Sbjct 8278 GTACGGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGAGGGATA 8219 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 || ||||||||||| ||||| ||||||| ||||||||||| | | | ||| Sbjct 8218 CCCTCCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCGACTTCT 8159 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || ||||| || ||||||||||| || |||||||| Sbjct 8158 AGGGTGATGGTTTTGCCAGTGAGAGTCTTGACAAAAATTTG 8118 Score = 120 bits (132), Expect = 2e-21 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || ||||| || ||| || || | || || |||| ||||| Sbjct 8564 ACGCAGACGCAGAACCAGATGTAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGT 8505 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || | ||||| || |||||||| ||||| || ||||| || ||||| || Sbjct 8504 ACGACCATCCTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGGGGAATACC 8445 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||| ||||| ||||| ||||||| ||||||||||||| | | || |||| Sbjct 8444 CTCCTTATCTTGGATCTTCGATTTGACATTGTCAATAGTATCAGAAGACTCAA-CCTCAA 8386 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || ||||| || ||||||||||| ||||| ||||| Sbjct 8385 GGGTGATGGTTTTGCCAGTGAGAGTCTTGACGAAGATTTG 8346 Score = 102 bits (112), Expect = 5e-16 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||| ||||| || || ||||| || || ||| ||| || || || |||| || Sbjct 8108 ACGCAGACGAAGAACCAGATGGAGAGTGGACTCCTTTTGGATG--TTGTAGTCAGAGAGG 8051 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | | ||| || || ||||| || |||||||| ||||| || ||||| ||||| || Sbjct 8050 GTACGGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCCGGAGGGATA 7991 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 || ||||||||||| ||||| ||||||| ||||||||||| | | | ||| Sbjct 7990 CCCTCCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCGACTTCT 7931 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 ||||| || || || ||||| || || || |||| Sbjct 7930 AGGGTGATGGTCTTTCCGGTAAGGGTTTTGACGA 7897 >seq170 Length=65362 Score = 96.9 bits (106), Expect = 2e-14 Identities = 169/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 474638 GGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAA 474697 || || || || || ||| | || || | || || || |||||| | ||| ||| Sbjct 45996 GGCGAGACCAAGCAGTTTACCCCCGAGGAGATCTCCTCTATGGTTCTGATCAAGATGCGT 46055 Query 474698 CAAACCGC-GAGCTCATATCTTGG-ACAAGAAGTAACTGATGCAGTAATTACTGTTCCAG 474755 | ||||| ||| || || ||||| || | |||| | || || || |||||||| | Sbjct 46056 GAGACCGCTGAG-TCGTACCTTGGTACCACCGTTAACA-ACGCTGTTATCACTGTTCCTG 46113 Query 474756 CATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTA 474815 | || || || |||||||| ||||| || || || || | || ||||| ||||| | Sbjct 46114 CCTACTTCAACGATTCTCAGCGTCAGGCTACCAAGGACTCTGGTCTTATTGCCGGTCTGA 46173 Query 474816 ATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGA 474875 |||| || ||||| ||||| || || || || || || |||| || ||||||||||||| Sbjct 46174 ATGTCTTGCGTATCATTAACGAGCCCACTGCCGCTGCCATTGCCTACGGTCTTGATAAGA 46233 Query 474876 A 474876 | Sbjct 46234 A 46234 >seq60 Length=113822 Score = 89.7 bits (98), Expect = 3e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 |||||||||| || || || || ||| | || |||||||| || || ||||| || | | Sbjct 50341 TTACTGTTCCCGCCTACTTCAACGATGCCCAGCGTCAAGCTACCAAGGATGCTGGCATCA 50400 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 |||| ||||| || || | |||||| | || || || || || ||||| | || || | Sbjct 50401 TTGCTGGTCTGAACATTCTCCGTATTGTCAACGAGCCCACTGCTGCCGCCATCGCCTACG 50460 Query 474864 GTCTTGATAAGA 474875 |||||||||||| Sbjct 50461 GTCTTGATAAGA 50472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268141495425092