Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016-
05-09] 879 sequences; 32,692,340 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq249 132 9e-26
>seq249
Length=46353
Score = 132 bits (146), Expect = 9e-26
Identities = 171/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| |||||||| | || ||||| |||||||| | || | ||| || ||| ||
Sbjct 8350 ATTTGCATACCACCACGCAGACGAAGAACCAGATGGAGAGTGGACTCCTTTTGAATGTTG 8291
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|||||||| | || | ||| || | || || ||||||||||| | | ||| |||
Sbjct 8290 TAGTCGGAGAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGA 8231
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| ||||| || || || || ||||| || || | ||| | ||| ||||||||||||
Sbjct 8230 TCTGGAGGGATACCCTCCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGAG 8171
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || |||||||| || || ||||| || || || || || ||||| ||||||||
Sbjct 8170 GATTCGACTTCTAGGGTGATGGTTTTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 8115
Score = 118 bits (130), Expect = 2e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| || |||||||| | |||| ||| || || || ||||| || | || | | |
Sbjct 8557 CGCAGAACCAGATGTAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGACCA 8498
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || || || || ||||||||||| | | ||| ||||| || || || || || |||
Sbjct 8497 TCCTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTA 8438
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || || | ||| | ||| ||||||||| ||||||||||| || || || ||
Sbjct 8437 TCTTGGATCTTCGATTTGACATTGTCAATAGTATCAGAAGACTCAACCTCAAGGGTGATG 8378
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| || || || || || || || ||||||||
Sbjct 8377 GTTTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 8343
Score = 109 bits (120), Expect = 1e-18
Identities = 159/225 (71%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| |||||||| | || ||||| |||||||| | || | ||| || || ||
Sbjct 8123 AATTTGCATACCACCACGCAGACGAAGAACCAGATGGAGAGTGGACTCCTTTTGGATGTT 8064
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
||||| || | || | ||| || | || || ||||||||||| | | ||| ||
Sbjct 8063 GTAGTCAGAGAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTG 8004
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
||| ||||| || || || || ||||| || || | ||| | ||| ||||||||||||
Sbjct 8003 ATCCGGAGGGATACCCTCCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGA 7944
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTAC 193348
|| || |||||||| || || || || || || || ||||| ||
Sbjct 7943 GGATTCGACTTCTAGGGTGATGGTCTTTCCGGTAAGGGTTTTGAC 7899
Score = 87.8 bits (96), Expect = 3e-12
Identities = 144/208 (69%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | || || || ||||| || | |||| ||| || || || ||||||
Sbjct 7823 ATACCACCACGCAGGCGGAGGACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG 7764
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| | || | | || || | ||| |||||||| ||||||| | ||| || || ||
Sbjct 7763 GACAGGGTGCGACCGTCCTCAAGTTGCTTTCCGGCGAAAATTAGACGCTGCTGGTCTGGG 7704
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || || ||||| || || || | || | ||| || || |||||||||||
Sbjct 7703 GGAATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAAGACTCG 7644
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTA 193338
|| || ||||| || || || || ||||
Sbjct 7643 ACCTCAAGAGTGATGGTCTTGCCGGTTA 7616
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899644515047280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |