Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq249 132 9e-26 >seq249 Length=46353 Score = 132 bits (146), Expect = 9e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | || ||||| |||||||| | || | ||| || ||| || Sbjct 8350 ATTTGCATACCACCACGCAGACGAAGAACCAGATGGAGAGTGGACTCCTTTTGAATGTTG 8291 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | || | ||| || | || || ||||||||||| | | ||| ||| Sbjct 8290 TAGTCGGAGAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGA 8231 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || || || || ||||| || || | ||| | ||| |||||||||||| Sbjct 8230 TCTGGAGGGATACCCTCCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGAG 8171 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || ||||| || || || || || ||||| |||||||| Sbjct 8170 GATTCGACTTCTAGGGTGATGGTTTTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 8115 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||||||| | |||| ||| || || || ||||| || | || | | | Sbjct 8557 CGCAGAACCAGATGTAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGACCA 8498 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || || || ||||||||||| | | ||| ||||| || || || || || ||| Sbjct 8497 TCCTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTA 8438 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | ||| | ||| ||||||||| ||||||||||| || || || || Sbjct 8437 TCTTGGATCTTCGATTTGACATTGTCAATAGTATCAGAAGACTCAACCTCAAGGGTGATG 8378 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || |||||||| Sbjct 8377 GTTTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 8343 Score = 109 bits (120), Expect = 1e-18 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | || ||||| |||||||| | || | ||| || || || Sbjct 8123 AATTTGCATACCACCACGCAGACGAAGAACCAGATGGAGAGTGGACTCCTTTTGGATGTT 8064 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || | || | ||| || | || || ||||||||||| | | ||| || Sbjct 8063 GTAGTCAGAGAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTG 8004 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || || || || ||||| || || | ||| | ||| |||||||||||| Sbjct 8003 ATCCGGAGGGATACCCTCCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGA 7944 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTAC 193348 || || |||||||| || || || || || || || ||||| || Sbjct 7943 GGATTCGACTTCTAGGGTGATGGTCTTTCCGGTAAGGGTTTTGAC 7899 Score = 87.8 bits (96), Expect = 3e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || || || ||||| || | |||| ||| || || || |||||| Sbjct 7823 ATACCACCACGCAGGCGGAGGACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG 7764 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | || || | ||| |||||||| ||||||| | ||| || || || Sbjct 7763 GACAGGGTGCGACCGTCCTCAAGTTGCTTTCCGGCGAAAATTAGACGCTGCTGGTCTGGG 7704 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || ||||| || || || | || | ||| || || ||||||||||| Sbjct 7703 GGAATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAAGACTCG 7644 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTA 193338 || || ||||| || || || || |||| Sbjct 7643 ACCTCAAGAGTGATGGTCTTGCCGGTTA 7616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899644515047280