Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016-
05-09] 879 sequences; 32,692,340 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq76 123 7e-23
seq309 122 3e-22
seq270 114 4e-20
seq53 104 7e-17
seq298 84.2 6e-11
>seq76
Length=103561
Score = 123 bits (136), Expect = 7e-23
Identities = 504/788 (64%), Gaps = 15/788 (2%)
Strand=Plus/Minus
Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCAC 155651
|| |||||||| || || || ||| | | ||| ||| || | ||||| ||||
Sbjct 2979 GAGGCCAGATTGCACACAGCGACCTCATCAGGGGCGCAGTACTCGATGATCTCGGTGCAC 2920
Query 155652 AGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711
||||| || || ||| ||||| | ||||||||||| || ||||| || ||||||
Sbjct 2919 AGGTTGGAGCTGCGGATAGTGCCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCC 2860
Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGG 155771
||||| || ||| | ||| |||| ||||| | || || || || || ||| ||
Sbjct 2859 TTGTACAGCATGAACGGGTTTCCGGTCTCGGTTTGGGCCTCGAGGATGGCGTACCATAGC 2800
Query 155772 TCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATA--TTTCATATACAGCG 155829
| |||| || || | | | ||| || ||| || |||| || | |||
Sbjct 2799 TTCTGGGCCTTGATGGTGAGGCGGCCGCGGCCCTCGCTCTCGTACTTTTCGTACAGAGCC 2740
Query 155830 TTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCG 155889
| | | || |||||||| || || ||| || ||||||| | |||||| | || |
Sbjct 2739 TC--GAACTCGTCACCGTAGCAGTCGGCCAGACCGGGGCACTCGTTGGGGCACATGAGTG 2682
Query 155890 ACCAAATT---TTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCAT 155946
||| | || || ||| |||||| ||| || | || ||| | ||
Sbjct 2681 TCCAGTTGGCGTTCTTCTCGA---CACGCTTCATGAACAGGTCGGGAATCCACAGGGCTA 2625
Query 155947 AGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATT 156006
||| ||||| | || |||||| | |||||| ||||| ||||| || | ||| |
Sbjct 2624 GGAACAGGTCGCGGGCACGAATCTCCTCCTTGCCGTGGTTCTTGCGTAGGTCGAGGAACT 2565
Query 156007 CCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---C 156063
| | ||| | ||| ||||| || || |||||||| ||| | |||| |
Sbjct 2564 CGAAGACATCGGCATGCCACGGCTCTAGGTAGATAGCAAAGGCTCCAGGGCGCTTGTTGC 2505
Query 156064 CACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCAT 156123
||||||| || ||||| || || || || |||||||| | ||||| || | || || |
Sbjct 2504 CACCCTGGTCAACATAGCGGGCGGTGTTGTTGAAGACGCGCAGCATGGGCACGATGCCGT 2445
Query 156124 TGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTA 156183
| || ||||| || || || ||| | ||| || | | ||| | | || | | |
Sbjct 2444 TTGACGTGCCGTTAGTGCCAGCAATGTACGAGCCGGTGGCGCGGATACGGTGGACGTTCA 2385
Query 156184 GTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATA 156242
| ||||||||||| | |||| || || || ||| || ||| | |||| | | |||
Sbjct 2384 GGCCAATACCACC-GGCCATCTTGGAGATCATAGCACAAGTCTTCAGCGTATCGTAGATA 2326
Query 156243 CCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGT 156302
|| ||||| ||||| | ||| | | |||| || || || | | ||
Sbjct 2325 CCCTCAATGCTGTCATCCTTCATGTCGACCAAGAAGCATGACGATAGCTGGGCCTGCGGC 2266
Query 156303 GTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCG 156362
|| ||||||||||| || ||||||| || || | ||| |||| | ||||| || | |
Sbjct 2265 GTGCCAGCGTTGAACAGCGTAGGTGAGGCGTGTGTGAAAAGCTTACTGGACATGTAGTTG 2206
Query 156363 TATGTCTC 156370
|| |||||
Sbjct 2205 TACGTCTC 2198
>seq309
Length=35318
Score = 122 bits (134), Expect = 3e-22
Identities = 206/296 (70%), Gaps = 2/296 (1%)
Strand=Plus/Plus
Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631
||||| | | ||||| || |||||| ||||| || |||||| | || || |||||
Sbjct 8961 TCTTCAAGAGCCTTGACTAGACGACGTTGAATGTATCCAGTTTCGGCAGTCTTGACAGCA 9020
Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-G 302690
|||||||| | ||| |||||||| |||| || |||||||| | ||| || |||| |
Sbjct 9021 GTATCAATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGAACTCGCTTGG-CGTAAG 9079
Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750
|| | || | ||| | ||||| || ||||| | |||||| |||| || |||||
Sbjct 9080 ACCACGAAGGTAAGAGTTTTCAACAAAGCCACGTGACTCGGGAGAATAATCATCTTTGGT 9139
Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810
||||| || || || | || || | || | || ||||||||||| || ||| | ||
Sbjct 9140 GAAGTGAGGAAGCGTACGGTACTTGAATCCAAAGGGAATACGCTTTCCTTCGACGATTTG 9199
Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAG 302866
|| || | | | | ||||||| |||||||| | | ||| ||||| ||||
Sbjct 9200 TTGACCGACCAAGGCAGTCATCTGGGAAATATTGATTGTAGAGCCTTTGGAACCAG 9255
>seq270
Length=41675
Score = 114 bits (126), Expect = 4e-20
Identities = 388/591 (66%), Gaps = 20/591 (3%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
||||||||||| | | || | |||||| | | ||||||| || | ||| | | ||
Sbjct 24361 ATAAGACCACAGATCTCGCAGATATGGACACGGAAAGCATCCGAAACTTCAAACAAACGC 24302
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| ||| || |||||||| | |||||| |||||||| |||||||| ||||||
Sbjct 24301 TCCTTCAGGAACGCAGCGGCACCGTGGGCAATCATGCAATCACGTTCCATTTCTCCGAAA 24242
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGA-GATTAACCATAGG 251585
|| ||||||||||| || || | ||| || | ||||| ||||| | |||| | ||
Sbjct 24241 CGCAGACCACCATCACGGGCACGACCTTCCACGGGCTGGCGAGTCATGATT-TGTACGGG 24183
Query 251586 ACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGC 251645
||| || ||| || ||| || | ||||| || ||||| ||||| | |
Sbjct 24182 ACCACGGGCACGGGCGTGGATCTTGTCGTCCACCATGTGACGCAGACGTTGGTAATAGGT 24123
Query 251646 GGGACCGATGAAGATGCTCGAAGGCA-TTTGCTCTCCAGTTAGAGCGTTATACATAACTT 251704
||||||| ||||| || | ||| |||| || | | ||| |||| | |
Sbjct 24122 AGGACCGAAGAAGACTTGCGCACGCAGCTTGC-GGCCTGAGTGGCCGTGGTACACACTCT 24064
Query 251705 CGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCACC-AATC--- 251760
| ||| || | || ||| | | ||||| ||| | |||| ||||
Sbjct 24063 CAAAACCACGCGACTGGTAGCCATGCTGGCGTAGC-----AGCGCTGACACCGAATCGAC 24009
Query 251761 -TTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCC 251819
||| | | || |||| | || || | | |||| || | | ||| || |
Sbjct 24008 AGTGACATCAGTGAATGGGGTGGCATCACCCTCCATACCCTTTAGCGTGGCCACCTTACT 23949
Query 251820 TAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGAT 251879
||||| ||| ||| ||||| || ||||||||| |||||||| || || |||||
Sbjct 23948 CAAAAGACACTCAATCAAATGGGCAATGGTCATACGAGAAGGAATAGCGTGAGGGTTGAT 23889
Query 251880 GATGATGTCGGGTTTCAGTCCATCAGCA-GTGAAGGGCATATCCTTTTCCTCAATAATGT 251938
|| |||||||| | | || || ||| ||||| ||||||| ||| | | |||| ||
Sbjct 23888 AATAATGTCGGGAGTGATGCCCTC-GCAGGTGAACGGCATAT-CTTCTTGGCGATAA-GT 23832
Query 251939 T--TCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
| ||||| || || || |||||||||||||| ||||||||||||||
Sbjct 23831 TACACCAATGGTACCTTTCTGTCCGTGACGAGACGCAAACTTATCACCAAT 23781
>seq53
Length=118516
Score = 104 bits (114), Expect = 7e-17
Identities = 238/353 (67%), Gaps = 4/353 (1%)
Strand=Plus/Minus
Query 133307 gAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATAT 133366
|| || ||| ||| ||||| | ||||| |||||| || ||||| || || ||
Sbjct 90396 GAGGCTCGTTGCTTCTATGGTTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTAC 90337
Query 133367 TCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAACGC 133425
||| | || ||||||||||| || || | | |||| |||| || | ||||||||
Sbjct 90336 TCTTTGTTGATCGATACTTACATTAAGGAGCCTGCCCAGC-GCACGTACCTGTTCAACGC 90278
Query 133426 CATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGA 133485
||| | |||| || || ||| | ||||||||| | || |||||| ||
Sbjct 90277 TATTGACACCATTCCCTGCATACGCCGCAAAGCCGACTGGGCTCTCAAGTGGATCTGCGA 90218
Query 133486 CA-AGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttt 133544
|| || | | | ||||||| || || | |||||||||| || || ||||| || |
Sbjct 90217 CAGAGAAT-CAACTTTTGCTCAGCGCCTAATCGCTTTTGCTGCTGTCGAAGGCATCTTCT 90159
Query 133545 tCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGT 133604
| ||| || || ||| || |||||||| ||||||||| | | || || |||
Sbjct 90158 TTTCTGGAGCCTTTGCCTCCATCTTTTGGCTGCGCAAGCGTGGTCTGATGCCCGGCCTGA 90099
Query 133605 GTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
||||||||||| || ||||| | || |||| || ||||| || ||||||
Sbjct 90098 CCTTTTCTAACGAGCTGATTTCTCGTGATGAGGGTCTGCACACTGACTTTGCC 90046
>seq298
Length=37418
Score = 84.2 bits (92), Expect = 6e-11
Identities = 140/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089
|||| ||| || |||||||| ||||||| | ||||| || |||| | || | |||
Sbjct 33109 CCAATAGCGTCGATTTCGTCGATGAAAACAATGCACGGTGAGTTTTTGCGGGCTGTCGCA 33050
Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149
|| | || | |||||| || | || | ||| ||| ||||||| ||||| || || ||
Sbjct 33049 AACAGATCGCGTACACGCGAAGGGCCGACACCGACAAACATTTCCACAAACTCGGAGCCG 32990
Query 289150 --GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207
|| ||| ||| ||| | ||| | ||||| || ||| | |||||||||||||
Sbjct 32989 CTGACACT-GAA-GAAAGGTACGCCAGACTCGCCGGCAGTCGCCTTAGCCAGAAGTGTCT 32932
Query 289208 TACCTGTTCCAGGTGGTCC 289226
|||| || ||||| || ||
Sbjct 32931 TACCGGTGCCAGGAGGACC 32913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471801024114223
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |