Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq140 187 3e-41 seq76 185 1e-40 seq164 136 5e-26 seq53 98.7 1e-14 seq2 98.7 1e-14 >seq140 Length=76443 Score = 187 bits (206), Expect = 3e-41 Identities = 277/393 (70%), Gaps = 6/393 (2%) Strand=Plus/Minus Query 18096 CTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCAT 18155 |||||| || |||||||| || || ||||||||||||||| | |||||| |||| Sbjct 49328 CTTTGGTGAATCGCACGGCAAGGCTGTGGGCTGCATCATCGACAACCCACCGCCGGGCAT 49269 Query 18156 GCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGC 18215 | | ||| |||| ||||| || ||||||||| || |||||||| || |||||| || | Sbjct 49268 GGCCCTGACCGAAGCCGATATACAGCCTCAGCTGACCCGGCGCCGGCCCGGCCAGAGCTC 49209 Query 18216 ACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGG 18275 | | ||||| |||||||| || || || | ||||| ||||||| ||| |||| Sbjct 49208 TATCACTACGCCACGCAACGAAAAGGACCGTGTGACCATCCTGTCGGGCTGCGAGGACGG 49149 Query 18276 CCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGA 18335 || || || ||| | || | | ||| || ||| |||||||| ||| || Sbjct 49148 CCGTACACTGGGCACTCCGATTGCCCTAACCGTTAACAATGAAGACCAGCGTCCCAGAGA 49089 Query 18336 CTATTCCGA------CATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACAT 18389 || | | |||| |||| | || || || || || ||||||| ||||||| Sbjct 49088 TTACGGCAACCAGACCATGGACAAGTTCCCCCGCCCTTCGCATGCCGACTTCACCTACCA 49029 Query 18390 GGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCT 18449 || |||||||| |||||||||||||||||||| ||||| ||| |||||||| | Sbjct 49028 GGAAAAGTACGGTATCAAGGCGTCGTCGGGCGGTGGCCGAAGCAGTGCGCGCGAGACTAT 48969 Query 18450 CATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 ||||| || || |||||||| |||||||| Sbjct 48968 TGCCCGCGTAGCTGCTGGCGCGGTAGCCGAGAA 48936 >seq76 Length=103561 Score = 185 bits (204), Expect = 1e-40 Identities = 308/447 (69%), Gaps = 15/447 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| || ||||| || |||| ||| |||||||| ||||||||||||| |||||| || Sbjct 2500 CTGGTCAACATAGCGGGCGGTGTTGTTGAAGACGCGCAGCATGGGCACGATGCCGTTTGA 2441 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | |||||| ||||| || | ||| | ||||| |||||| | ||| || | ||| Sbjct 2440 CGTGCCGTTAGTGCCAGCAATGTACGAGCCGGTGGCGCGGATACGGTGGACGTTCAGGCC 2381 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || |||||| ||||||||| | || || || ||||| |||||||| ||||| Sbjct 2380 AATACCACCGGCCATCTTGGAGATCATAGCACAAGTCTTCAGCGTATCGTAGATACCCTC 2321 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| |||||||||| || | ||||| ||||| || | |||| |||||| Sbjct 2320 AATGCTGTCATCCTTCATGTCGACCAAGAAGCATGACGATAGCTGGGCCTGCGGCGTGCC 2261 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||| ||||| || | || ||||| | || | |||||| || ||| || Sbjct 2260 AGCGTTGAACAGCGTAGGTGAGGCGTGTGTGAAAAGCTTACTGGACATGTAGTTGTACGT 2201 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||||||| || ||| | |||| || || |||| ||| || Sbjct 2200 CTCGAGCACACG---------GTCGACACGGTCG------CCCCAGATACCGACGGCAAC 2156 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| ||| || |||||||||| |||| || |||| ||| || || Sbjct 2155 ACGCATGATCATGTGCTGCGGACGCTCGACGATCTTGCCGTCCAACTTGAGCAGATACGA 2096 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTA 1630511 || || ||| | | ||||||||| Sbjct 2095 TCGCTCCAAGGTTTTAAAGCCAAAGTA 2069 Score = 118 bits (130), Expect = 1e-20 Identities = 291/443 (66%), Gaps = 8/443 (2%) Strand=Plus/Minus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCG-TCGTACCCAGGTTCTGCTGGTTG 1628220 ||| || |||||||||||||||||||| | | | | || |||||||||| ||||||| Sbjct 2939 ACTCGATGATCTCGGTGCACAGGTTGGA-GCTGCGGATAGTGCCCAGGTTCTTCTGGTTG 2881 Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280 | || |||| ||| ||||||| |||||| | || ||||||||| | || ||| Sbjct 2880 CTCTTCCTGTTGCAGGCATCCTTGTACAGCATGAACGGGTTTCCGGTCTCGGTTTGGGCC 2821 Query 1628281 GCGACGATGGCCGACCAGA---TCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNN 1628337 ||| |||||| |||| | ||||| || | | | || | || ||||||||| Sbjct 2820 TCGAGGATGGCGTACCATAGCTTCTGG-GC-CTTGATGGTGAGGCGGC-CGCGGCCCTCG 2764 Query 1628338 NNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGC 1628397 || || | | |||||||| ||| ||| ||||| Sbjct 2763 CTCTCGTACTTTTCGTACAGAGCCTCGAACTCGTCACCGTAGCAGTCGGCCAGACCGGGG 2704 Query 1628398 GCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGG 1628457 |||| || || | ||| | ||||| | | || | | || ||| || ||| Sbjct 2703 CACTCGTTGGGGCACATGAGTGTCCAGTTGGCGTTCTTCTCGACACGCTTCATGAACAGG 2644 Query 1628458 TCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTC 1628517 || ||||||| || || |||||||| || || |||||||||||||||||||| Sbjct 2643 TCGGGAATCCACAGGGCTAGGAACAGGTCGCGGGCACGAATCTCCTCCTTGCCGTGGTTC 2584 Query 1628518 TTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAG 1628577 || |||||||| | |||| | ||||| ||||||||||| |||||| |||||| Sbjct 2583 TTGCGTAGGTCGAGGAACTCGAAGACATCGGCATGCCACGGCTCTAGGTAGATAGCAAAG 2524 Query 1628578 GCGCCCTTGCGCTTGCCGCCGCC 1628600 || || ||||||| ||| || Sbjct 2523 GCTCCAGGGCGCTTGTTGCCACC 2501 Score = 98.7 bits (108), Expect = 1e-14 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 1627870 TCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGGCC 1627929 ||||| || ||||| || || || || || || |||||||||| || || | ||| Sbjct 3168 TCGGCTAGACCCTGAACACCAACTCCAATAGGGCGGTGGCGCATATTGCTGTTATGAGCC 3109 Query 1627930 TCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCTGG 1627989 |||||||| || || | |||| |||||| | |||||| ||||||| ||| ||||||| | Sbjct 3108 TCGGGCACGGGATAATAATTGACGTCGATGATGCGGTTCAGGTTGCGCACGACGACCTTG 3049 Query 1627990 ACGATCTCGTGCAG 1628003 |||||||||||| Sbjct 3048 GTGATCTCGTGCAG 3035 >seq164 Length=67468 Score = 136 bits (150), Expect = 5e-26 Identities = 95/108 (88%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| ||||||| ||||| ||||||||| |||| ||| |||| |||||| | || || ||| Sbjct 58797 GCCTCCAACTATCTCGATATCAAGCCTTTGCTGGATGTTGGCTGCAAGACCGTCGCAAAC 58856 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 ||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 58857 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACCTTCAACATC 58904 >seq53 Length=118516 Score = 98.7 bits (108), Expect = 1e-14 Identities = 221/324 (68%), Gaps = 11/324 (3%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || || |||||||||||||||||||||| | || || || Sbjct 89750 GCCTTCTGGTAGTCACCAACACGTTTCTCGAAAAAGTTGGTCTTGCCCCCCAGAGAAATG 89809 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||| ||| ||| || || | | | Sbjct 89810 TTCTCCATGAAGTCGAAGGGGTTGGTAGCACGGTACACCTTGTCGTTGCCAAGGGCCACT 89869 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA-T 868869 | || |||||||| || ||||| || ||||| ||| ||| | ||||||||||||| | Sbjct 89870 AAGAGACGGTCGGCAACGAACTCAATATACTGCTTCATCAGGTCAGCGTTCATGCCGAGT 89929 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 | | || || || | ||| ||| ||||| ||||| || ||||||| ||| ||| Sbjct 89930 AAACCGCA-AGGAAGAGCCTCAGTCAGGAACTCCTTCTCAATGACGACGGCGTCGGTGAT 89988 Query 868930 GATCTGCCTGGGCACGT--CGGCCGAGGGC--TTGTTGACGAGCATCGTGTAGAGCAGGC 868985 ||| || || | || || | | ||||| ||||| | | | | | | | ||||| Sbjct 89989 GATTTG-CTCGACAAGTTCCTTGCCAGGGCGGTTGTTCAGGTG---GGAGAACAACAGGC 90044 Query 868986 AGGCAAAGTCGCAGTGCA-ACCCT 869008 |||||||||| ||||| ||||| Sbjct 90045 AGGCAAAGTCAGTGTGCAGACCCT 90068 Score = 86.0 bits (94), Expect = 8e-11 Identities = 136/190 (72%), Gaps = 5/190 (3%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || || ||| |||| ||||| ||||| ||||||||||| || || ||||| Sbjct 90064 ACCCTCATCACGAGAAATCAGCTCGTTAGAAAAGGTCAGGCCGGGCATCAGACCACGCTT 90123 Query 869239 CTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 ||||||||||||| ||| | || || || || |||||||| ||||| || |||| Sbjct 90124 GCGCAGCCAAAAGATGGAGGCAAAGGCT-CCAGAAAAGAAGATGCCTTCGACAGCAGCAA 90182 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCC 869357 | |||| || |||| ||||| || || | || | | ||||||||| | |||| Sbjct 90183 AAGCGATTAGGCGCTGAGCAAA--AGTTGATTCTCT-GTCGCAGATCCACTTGAGAGCCC 90239 Query 869358 AGTCGGCCTT 869367 ||||||| || Sbjct 90240 AGTCGGCTTT 90249 >seq2 Length=318682 Score = 98.7 bits (108), Expect = 1e-14 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 1574065 CCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGC 1574124 |||| ||||| ||| | |||||||||||||| ||||||| | | || || | ||||||| Sbjct 37171 CCGGCCGCCATAAGCTTATCATCCTCGACGAAGCCGACTCCATGACTTCTGGTGCCCAGC 37230 Query 1574125 AGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCA 1574184 | ||||| || || ||||||| || |||| || || |||||||| | || |||| Sbjct 37231 AAGCCCTTCGTCGTACGATGGAAATTTACTCCAATACTACCCGCTTTGCATTTGCCTGCA 37290 Query 1574185 ACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTTTGTGC 1574244 | ||| | | |||| ||| |||| ||| || ||||| || |||||| || || Sbjct 37291 ATCAGTCTAACAAGATCATTGAGCCCCTACAATCGCGTTGCGCTATCTTGCGCTATGCGC 37350 Query 1574245 GCCT 1574248 | || Sbjct 37351 GTCT 37354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107067065143643