Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq21 100 2e-16 seq249 98.7 8e-16 >seq21 Length=160800 Score = 100 bits (110), Expect = 2e-16 Identities = 217/323 (67%), Gaps = 4/323 (1%) Strand=Plus/Plus Query 34311 GATGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACC 34370 ||||| ||||||| ||||| | || | | || | ||||||||| ||||| || Sbjct 63452 GATGACGACAGTCTCGGGGTTCTTGCACTTCTTGCAGAGAACAAACTTGACAATGAAGCC 63511 Query 34371 ATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 | | | ||||| | ||| | ||| || || ||||||| ||| | || || | Sbjct 63512 GTAGACGTGATCCTGCAGCTTCTTTGTGTCATGTGAACCGTTGATGATCCAGCGATCATC 63571 Query 34431 TTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAAT 34490 ||| | | || || || ||||||||| | ||||||||||| || ||| | Sbjct 63572 CGGAGGATCAATATTGGTCTGGGCACCCAGCTCGAAACCGAAGTACTTGATCAGGTGAGC 63631 Query 34491 GGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCC 34550 | || || | |||| || ||||| | | || |||||| |||||||||||||| || Sbjct 63632 ACCAGGGCGAGCCAGCGACTGGGCGACGGCAGACAGGTTGACAATGACAGTCTTGATACC 63691 Query 34551 GTTGCCCTTTCCTTCGACCTTGG--CGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCG 34608 || || || || |||| ||| | | ||| || ||||| ||||| ||||||||| | Sbjct 63692 ATTACCTTTACCCTCGATCTTAGTTTGAAGA--CGGGGCATCTTGTAACGGTAGAACTGG 63749 Query 34609 TCCGCCACATTGCGGTTAACGTT 34631 || | |||| | |||| ||||| Sbjct 63750 TCGGTAACATCGGGGTTGACGTT 63772 >seq249 Length=46353 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAA-ACGGAGCCTGA 110331 |||||||| |||||||| ||| | || ||||||||||| ||| | ||| || | ||| Sbjct 8115 ATGCAAATTTTTGTCAAGACTCTCACTGGCAAAACCATCACCCTAGAAGTCGAATCCT-C 8173 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||||| | | | | || ||| |||||| ||||| || || | || ||||| Sbjct 8174 CGATACTATTGACAATGTCAAATCGAAGATCCAAGACAAGGAGGGTATCCCTCCAGATCA 8233 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | || |||| ||| || || ||||||||||||| | | || | | || ||||| Sbjct 8234 GCAGCGTCTGATTTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTCTCCGACTACAA 8293 Query 110452 CATTCAAAAAGAATCTAC 110469 ||||||||| || || || Sbjct 8294 CATTCAAAAGGAGTCCAC 8311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412837177305347