Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq249 104 2e-17 >seq249 Length=46353 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| ||| | || ||||||||||| ||| | ||| || | | Sbjct 8115 ATGCAAATTTTTGTCAAGACTCTCACTGGCAAAACCATCACCCTAGAAGTCGAATCCTCC 8174 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | | || ||| ||||| || || || || | || |||||| Sbjct 8175 GATACTATTGACAATGTCAAATCGAAGATCCAAGACAAGGAGGGTATCCCTCCAGATCAG 8234 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| ||| || || ||||||||||| | | || | | ||||||||| Sbjct 8235 CAGCGTCTGATTTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTCTCCGACTACAAC 8294 Query 107736 ATTCAAAAGGAGTCTAC 107752 |||||||||||||| || Sbjct 8295 ATTCAAAAGGAGTCCAC 8311 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| ||| | || ||||||||||| ||| | || ||| || Sbjct 8343 ATGCAAATCTTCGTCAAGACTCTCACTGGCAAAACCATCACCCTTGAGGTTGAGTCTTCT 8402 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | | || ||| ||||| ||||| || || | ||| |||||| Sbjct 8403 GATACTATTGACAATGTCAAATCGAAGATCCAAGATAAGGAGGGTATTCCCCCAGATCAG 8462 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| ||| || || ||| ||||||| | || | | ||||||||| Sbjct 8463 CAGCGTCTGATTTTTGCCGGCAAGCAGTTGGAGGATGGTCGTACTCTCTCTGACTACAAC 8522 Query 107736 ATTCAAAAGGAGTCTAC 107752 || |||||||||||||| Sbjct 8523 ATCCAAAAGGAGTCTAC 8539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398872526907631