Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq170 105 5e-17 seq309 86.0 5e-11 >seq170 Length=65362 Score = 105 bits (116), Expect = 5e-17 Identities = 192/280 (69%), Gaps = 1/280 (0%) Strand=Plus/Minus Query 282200 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 282259 |||||||| |||| | ||| | || | || | | || | ||| | ||||| ||| Sbjct 46366 TCTTCACCACCCAGATGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCATCCTCA 46307 Query 282260 AGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 282319 | | ||| || | ||||| || |||||||||| ||| || || || || || Sbjct 46306 ATGGTCAACAGCGAGACATCGAAAGTGCCACCACCCAGATCGAAGATCAGGACGTTGCGC 46247 Query 282320 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 282379 || || || ||||||||||| || |||| ||||| ||||| || || ||||| Sbjct 46246 TCACCCTCGACCTTCTTATCAAGACCGTAGGCAATGGCAGCGGCAGTGGGCTCGTTAATG 46187 Query 282380 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 282439 || | ||| ||||| ||||| ||||| || | || || || || || | || ||| Sbjct 46186 ATACGCAAGACATTCAGACCGGCAATAAGACCAGAGTCCTTGGTAGCCTGACGCTGAGAA 46127 Query 282440 TCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA 282479 ||||| || || ||||||||||| ||||| || | ||||| Sbjct 46126 TCGTTGAAGTAGGCAGGAACAGTGATAACAGCGT-TGTTA 46088 >seq309 Length=35318 Score = 86.0 bits (94), Expect = 5e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 || || |||||||| | |||||||||||||||||| | ||| |||| ||| | || ||| Sbjct 9067 GAGTTCTTCTTCCACGCCATGGCTGGTCGTGAAGGTTTGATTGATACTGCTGTCAAGACT 9008 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTA 435244 || || ||||| || |||||| | || |||||| ||||||||| ||| Sbjct 9007 GCCGAAACTGGATACATTCAACGTCGTCTAGTCAAGGCTCTTGAAGATGTTA 8956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740587244814654