Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016-
05-09] 879 sequences; 32,692,340 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq249 107 2e-18
seq53 86.0 6e-12
>seq249
Length=46353
Score = 107 bits (118), Expect = 2e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| || | ||||| ||| | | ||||| |||||||||||||||||| | |||
Sbjct 8336 ACGCAGACGAAGAACCAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGT 8277
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
||| ||| || ||||| || |||| | | || |||||||| ||||||||||| || ||
Sbjct 8276 ACGGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGAGGGATACC 8217
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|| || || || || ||| | | || | |||||||| | || ||||| |
Sbjct 8216 CTCCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCGACTTCTAG 8157
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | ||||| ||||| ||||| || | ||||| |||||
Sbjct 8156 GGTGATGGTTTTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 8115
Score = 98.7 bits (108), Expect = 9e-16
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| |||| ||||| ||||| | | ||||| ||||| ||||||||||| | ||
Sbjct 8564 ACGCAGACGCAGAACCAGATGTAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGT 8505
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
||| ||| || | ||| || |||| | | || |||||||| |||||||| || || ||
Sbjct 8504 ACGACCATCCTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGGGGAATACC 8445
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|| ||||| || || ||| | | || | |||||| | | ||| || || |
Sbjct 8444 CTCCTTATCTTGGATCTTCGATTTGACATTGTCAATAGTATCAGAAGACTCAACCTCAAG 8385
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | ||||| ||||| ||||| || | ||| || |||||
Sbjct 8384 GGTGATGGTTTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 8343
>seq53
Length=118516
Score = 86.0 bits (94), Expect = 6e-12
Identities = 150/215 (70%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 47057 CATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACA 47116
||| || |||||||| | |||| ||| || || || || || ||||||||||| |
Sbjct 89971 CATTGAGAAGGAGTTCCTGACTGAGGCTCTTCCTTGCGGTTTACTCGGCATGAACGCTGA 89912
Query 47117 GTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACC 47176
||| | ||||||||||| || || || ||||| || ||| || || ||||
Sbjct 89911 CCTGATGAAGCAGTATATTGAGTTCGTTGCCGACCGTCTCTTAGTGGCCCTTGG-CAAC- 89854
Query 47177 GAAATATTTTAA--TGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGC 47234
|| | | || |||| || || || || || ||| | |||||||| || | ||||
Sbjct 89853 GACAAGGTGTACCGTGCTACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGGGGGC 89794
Query 47235 AAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269
|| ||||| |||||||||||||| || || || ||
Sbjct 89793 AAGACCAACTTTTTCGAGAAACGTGTTGGTGACTA 89759
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476605963234440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |