Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq249 107 2e-18 seq53 86.0 6e-12 >seq249 Length=46353 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| ||| | | ||||| |||||||||||||||||| | ||| Sbjct 8336 ACGCAGACGAAGAACCAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGT 8277 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || ||||| || |||| | | || |||||||| ||||||||||| || || Sbjct 8276 ACGGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGAGGGATACC 8217 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || ||| | | || | |||||||| | || ||||| | Sbjct 8216 CTCCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGAGGATTCGACTTCTAG 8157 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||| ||||| || | ||||| ||||| Sbjct 8156 GGTGATGGTTTTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 8115 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| ||||| ||||| | | ||||| ||||| ||||||||||| | || Sbjct 8564 ACGCAGACGCAGAACCAGATGTAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGT 8505 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || | ||| || |||| | | || |||||||| |||||||| || || || Sbjct 8504 ACGACCATCCTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCTGGGGGAATACC 8445 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || ||||| || || ||| | | || | |||||| | | ||| || || | Sbjct 8444 CTCCTTATCTTGGATCTTCGATTTGACATTGTCAATAGTATCAGAAGACTCAACCTCAAG 8385 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||| ||||| || | ||| || ||||| Sbjct 8384 GGTGATGGTTTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 8343 >seq53 Length=118516 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 47057 CATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACA 47116 ||| || |||||||| | |||| ||| || || || || || ||||||||||| | Sbjct 89971 CATTGAGAAGGAGTTCCTGACTGAGGCTCTTCCTTGCGGTTTACTCGGCATGAACGCTGA 89912 Query 47117 GTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACC 47176 ||| | ||||||||||| || || || ||||| || ||| || || |||| Sbjct 89911 CCTGATGAAGCAGTATATTGAGTTCGTTGCCGACCGTCTCTTAGTGGCCCTTGG-CAAC- 89854 Query 47177 GAAATATTTTAA--TGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGC 47234 || | | || |||| || || || || || ||| | |||||||| || | |||| Sbjct 89853 GACAAGGTGTACCGTGCTACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGGGGGC 89794 Query 47235 AAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 || ||||| |||||||||||||| || || || || Sbjct 89793 AAGACCAACTTTTTCGAGAAACGTGTTGGTGACTA 89759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476605963234440