Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016-
05-09] 879 sequences; 32,692,340 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq76 159 5e-33
seq53 141 1e-27
seq2 98.7 1e-14
>seq76
Length=103561
Score = 159 bits (176), Expect = 5e-33
Identities = 340/502 (68%), Gaps = 17/502 (3%)
Strand=Plus/Plus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||||||| | | ||| |||||||| ||| || |||||| |||| |||||||
Sbjct 2015 CACAAGGATGAGTTGGACTCTGCCATCGTGTACGATCGTGACTTTAACTACCAGTACTTT 2074
Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCGG 259801
|| | |||||| || || || ||| ||| || || | ||||||||||
Sbjct 2075 GGCTTTAAAACCTTGGAGCGATCGTATCTGCTCAAGTTGGACGGCAAGATCGTCGAGCGT 2134
Query 259802 CCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAAT 259861
|| ||| | ||| |||||||||| ||| | || | |||| ||| |||||| |
Sbjct 2135 CCGCAGCACATGATCATGCGTGTTGCCGTCGGTA--TCTGGGGCGACCGT-GTCGACCGT 2191
Query 259862 GCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGC 259920
| ||| ||| |||| | | |||| ||||| ||| | | | ||||| ||
Sbjct 2192 GTGCTCGAG-ACGTAC-----AACTAC------ATGTC-CAGTAAGCTTTTCACACACGC 2238
Query 259921 GACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTT 259980
| || ||||| || || || |||||||||| | ||| ||||| ||||| || |
Sbjct 2239 CTCACCTACGCTGTTCAACGCTGGCACGCCGCAGGCCCAGCTATCGTCATGCTTCTTGGT 2298
Query 259981 GGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCAT 260040
|||||||||| || || ||||| ||||| || ||||| ||| || || | ||
Sbjct 2299 CGACATGAAGGATGACAGCATTGAGGGTATCTACGATACGCTGAAGACTTGTGCTATGAT 2358
Query 260041 CTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTA 260100
||||||| |||||| || || || | || ||| | |||||| | ||| | ||
Sbjct 2359 CTCCAAGATGGCCGGTGGTATTGGCCTGAACGTCCACCGTATCCGCGCCACCGGCTCGTA 2418
Query 260101 CGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGA 260160
| | || ||||| |||||| ||| |||||| | ||||||||||| ||||| || ||| |
Sbjct 2419 CATTGCTGGCACTAACGGCACGTCAAACGGCATCGTGCCCATGCTGCGCGTCTTCAACAA 2478
Query 260161 CACGGCGCGCTACGTCGACCAG 260182
||| || ||||| || ||||||
Sbjct 2479 CACCGCCCGCTATGTTGACCAG 2500
Score = 107 bits (118), Expect = 3e-17
Identities = 294/451 (65%), Gaps = 18/451 (4%)
Strand=Plus/Plus
Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847
|| ||| ||||||| || |||||||| |||||| || |||||||| ||||| ||
Sbjct 2501 GGTGGCAACAAGCGCCCTGGAGCCTTTGCTATCTACCTAGAGCCGTGGCATGCCGATGTC 2560
Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907
|| | | || ||||| |||||||||||||||| ||||| || || ||||
Sbjct 2561 TTCGAGTTCCTCGACCTACGCAAGAACCACGGCAAGGA----GGAGATTCGTGCCCGCG- 2615
Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967
| || || | |||||||| ||||||||| ||| || | | || | |
Sbjct 2616 -ACCTGTTCCTAGCCCTGTGGATTCCCGACCTGTTCATGAAGCGTGTCGAGAAGAACGCC 2674
Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027
||||| | ||| | ||||| |||| ||||| ||| ||| ||||| || | |
Sbjct 2675 AACTGGACACTCATGTGCCCCAACGAGTGCCCCGGTCTGGCCGACTGCTACGGTGACGAG 2734
Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGCCCGCA 262087
|| || || || || || ||||| ||| | || ||
Sbjct 2735 TTCGAGGCTCTGTACGA----AAAGTACGAGAGCGAGGGCCGCGG-CCGCCTCACCATCA 2789
Query 262088 CGAC-----AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACA 262142
| | || | |||| ||||| ||| |||||| | ||||||||| | || | ||
Sbjct 2790 AGGCCCAGAAGCTATGGTACGCCATCCTCGAGGCCCAAACCGAGACCGGAAACCCGTTCA 2849
Query 262143 TGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACA 262201
|| | |||||||| ||| |||| || ||||||||| ||||||||||||| | | ||
Sbjct 2850 TGCTGTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACCTGGGCACTATCCGCA 2909
Query 262202 GAGGCCAACCTGTGCACCGAGATCGTCCAGT 262232
| |||||||||||||||||||| || |||
Sbjct 2910 G-CTCCAACCTGTGCACCGAGATCATCGAGT 2939
>seq53
Length=118516
Score = 141 bits (156), Expect = 1e-27
Identities = 348/512 (68%), Gaps = 22/512 (4%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || ||||| |||||||| || ||||| || |||||| | || |
Sbjct 90601 GATCTGGCAGATGTAC-AAGAAGGCTGAGGCCTCGTTCTGGACTGCTGAGGAGATTGATC 90543
Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887
| | || |||| ||||| ||| | | | ||||||| | |||
Sbjct 90542 TATCCAAAGATCTCCACG----ACTGGAACAACCGGCTTACCAAGGACGAGCAGTACTTC 90487
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
||| ||| | || ||||| ||| || ||| |||||||| || |||||||||||
Sbjct 90486 ATCTCTCACATTCTGGCCTTCTTT-GCTGCCTCTGATGGCATAGTCAACGAGAACCTGGT 90428
Query 1455948 CGGCCGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGA 1456006
| || || | || |||||||| | || ||||| |||| || || || |||||||
Sbjct 90427 TGAGCGTTTCTCTGGC-GAGGTCCAGATCCCTGAGGCTCGTTGCTTCTATGGTTTCCAGA 90369
Query 1456007 TCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGG 1456066
|| || || ||||||||||| || |||||||| | ||||||| || ||| | ||||
Sbjct 90368 TCATGATGGAGAACATCCACTCCGAGACCTACTCTTTGTTGATCGATACTTACATTAAGG 90309
Query 1456067 ACCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125
| || | | || | || |||| || ||| || ||||| | || | | |
Sbjct 90308 AGCCTGCCCAG-CGCACGTACCTGTTCAACGCTATTGACACCATTCCCTGCATACGCCGC 90250
Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGC 1456185
|| ||||||||||| | ||||||||| | | || | || || ||||| |||| |
Sbjct 90249 AAAGCCGACTGGGCTCTCAAGTGGATCTGCGA-CAGAGAATCAAC-TTTTGCTCAGCGCC 90192
Query 1456186 TCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTG-CGCCATCTTT 1456243
| ||| ||||| || ||||| |||||||| || || || || | || | ||||||||
Sbjct 90191 TAATCGCTTTTGCTGCTGTCGAAGGCATCTTCTTTTCTGG-AGCCTTTGCCTCCATCTTT 90133
Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||||| ||||| || || |||||||| ||
Sbjct 90132 TGGCTGCGCAAGCGTGGTCTGATGCCCGGCCT 90101
Score = 91.5 bits (100), Expect = 2e-12
Identities = 179/257 (70%), Gaps = 6/257 (2%)
Strand=Plus/Minus
Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577
|||| |||||| ||| ||||||| || ||||| ||||| | | ||| | || ||
Sbjct 89996 AGCAAATCATCACCGACGCCGTCGTCATTGAGAAGGAGTTCCTGACTGAGGCTCTTCCT- 89938
Query 1456578 TGGCGCTCA-TCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCG 1456636
|| | | | ||||||||||||| | || ||| ||||| ||||| || || ||||
Sbjct 89937 TGCGGTTTACTCGGCATGAACGCTGAC-CTGATGAAGCAGTATATTGAGTTC-GTTGCCG 89880
Query 1456637 ACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCA 1456696
|||| || | | ||| || ||| || | ||| ||||| | ||||||| |||
Sbjct 89879 ACCGTCTCTTAGTGGCCCTTGGCAACG-ACAAGGTGTACCGTGCTACCAACCCCTTCGAC 89821
Query 1456697 TGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAG 1456755
| |||||| || || || | |||||||||||||||||||||| || | ||| ||
Sbjct 89820 TTCATGGAGAACATTTCTCTGGGGGGCAAGACCAACTTTTTCGAGAAACGTGTTGGTGAC 89761
Query 1456756 TACGCCAAGGCCGGCGT 1456772
||| |||||||| ||
Sbjct 89760 TACCAGAAGGCCGGTGT 89744
>seq2
Length=318682
Score = 98.7 bits (108), Expect = 1e-14
Identities = 144/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 332847 CGATTTGGGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCT 332906
||| ||| |||| || || ||| || |||||| ||| || ||||| || |||| ||
Sbjct 37371 CGACTTGTTCGTCGGTAAGACGCGCATAGCGCAAGATAGCGCAACGCGATTGTAGGGGCT 37312
Query 332907 CGATGACCATTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTT 332966
| |||| | | ||| |||||||| | ||||| || || ||||||| | |||
Sbjct 37311 CAATGATCTTGTTAGACTGATTGCAGGCAAATGCAAAGCGGGTAGTATTGGAGTAAATTT 37252
Query 332967 CCATGGT-CGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGG 333025
|||| || |||| | ||||| || ||||| | | || | | ||||||| |||||||||
Sbjct 37251 CCATCGTACGAC-GAAGGGCTTGCTGGGCACCAGAAGTCATGGAGTCGGCTTCGTCGAGG 37193
Query 333026 ATGATGATCTTGTGGCGCCCG 333046
||||| | ||| ||||| |||
Sbjct 37192 ATGATAAGCTTATGGCGGCCG 37172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177726418834398
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |