Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq76 159 5e-33 seq53 141 1e-27 seq2 98.7 1e-14 >seq76 Length=103561 Score = 159 bits (176), Expect = 5e-33 Identities = 340/502 (68%), Gaps = 17/502 (3%) Strand=Plus/Plus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||| | | ||| |||||||| ||| || |||||| |||| ||||||| Sbjct 2015 CACAAGGATGAGTTGGACTCTGCCATCGTGTACGATCGTGACTTTAACTACCAGTACTTT 2074 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCGG 259801 || | |||||| || || || ||| ||| || || | |||||||||| Sbjct 2075 GGCTTTAAAACCTTGGAGCGATCGTATCTGCTCAAGTTGGACGGCAAGATCGTCGAGCGT 2134 Query 259802 CCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAAT 259861 || ||| | ||| |||||||||| ||| | || | |||| ||| |||||| | Sbjct 2135 CCGCAGCACATGATCATGCGTGTTGCCGTCGGTA--TCTGGGGCGACCGT-GTCGACCGT 2191 Query 259862 GCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGC 259920 | ||| ||| |||| | | |||| ||||| ||| | | | ||||| || Sbjct 2192 GTGCTCGAG-ACGTAC-----AACTAC------ATGTC-CAGTAAGCTTTTCACACACGC 2238 Query 259921 GACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTT 259980 | || ||||| || || || |||||||||| | ||| ||||| ||||| || | Sbjct 2239 CTCACCTACGCTGTTCAACGCTGGCACGCCGCAGGCCCAGCTATCGTCATGCTTCTTGGT 2298 Query 259981 GGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCAT 260040 |||||||||| || || ||||| ||||| || ||||| ||| || || | || Sbjct 2299 CGACATGAAGGATGACAGCATTGAGGGTATCTACGATACGCTGAAGACTTGTGCTATGAT 2358 Query 260041 CTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTA 260100 ||||||| |||||| || || || | || ||| | |||||| | ||| | || Sbjct 2359 CTCCAAGATGGCCGGTGGTATTGGCCTGAACGTCCACCGTATCCGCGCCACCGGCTCGTA 2418 Query 260101 CGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGA 260160 | | || ||||| |||||| ||| |||||| | ||||||||||| ||||| || ||| | Sbjct 2419 CATTGCTGGCACTAACGGCACGTCAAACGGCATCGTGCCCATGCTGCGCGTCTTCAACAA 2478 Query 260161 CACGGCGCGCTACGTCGACCAG 260182 ||| || ||||| || |||||| Sbjct 2479 CACCGCCCGCTATGTTGACCAG 2500 Score = 107 bits (118), Expect = 3e-17 Identities = 294/451 (65%), Gaps = 18/451 (4%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| ||||||| || |||||||| |||||| || |||||||| ||||| || Sbjct 2501 GGTGGCAACAAGCGCCCTGGAGCCTTTGCTATCTACCTAGAGCCGTGGCATGCCGATGTC 2560 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | || ||||| |||||||||||||||| ||||| || || |||| Sbjct 2561 TTCGAGTTCCTCGACCTACGCAAGAACCACGGCAAGGA----GGAGATTCGTGCCCGCG- 2615 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 | || || | |||||||| ||||||||| ||| || | | || | | Sbjct 2616 -ACCTGTTCCTAGCCCTGTGGATTCCCGACCTGTTCATGAAGCGTGTCGAGAAGAACGCC 2674 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 ||||| | ||| | ||||| |||| ||||| ||| ||| ||||| || | | Sbjct 2675 AACTGGACACTCATGTGCCCCAACGAGTGCCCCGGTCTGGCCGACTGCTACGGTGACGAG 2734 Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGCCCGCA 262087 || || || || || || ||||| ||| | || || Sbjct 2735 TTCGAGGCTCTGTACGA----AAAGTACGAGAGCGAGGGCCGCGG-CCGCCTCACCATCA 2789 Query 262088 CGAC-----AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACA 262142 | | || | |||| ||||| ||| |||||| | ||||||||| | || | || Sbjct 2790 AGGCCCAGAAGCTATGGTACGCCATCCTCGAGGCCCAAACCGAGACCGGAAACCCGTTCA 2849 Query 262143 TGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACA 262201 || | |||||||| ||| |||| || ||||||||| ||||||||||||| | | || Sbjct 2850 TGCTGTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACCTGGGCACTATCCGCA 2909 Query 262202 GAGGCCAACCTGTGCACCGAGATCGTCCAGT 262232 | |||||||||||||||||||| || ||| Sbjct 2910 G-CTCCAACCTGTGCACCGAGATCATCGAGT 2939 >seq53 Length=118516 Score = 141 bits (156), Expect = 1e-27 Identities = 348/512 (68%), Gaps = 22/512 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| |||||||| || ||||| || |||||| | || | Sbjct 90601 GATCTGGCAGATGTAC-AAGAAGGCTGAGGCCTCGTTCTGGACTGCTGAGGAGATTGATC 90543 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| ||| | | | ||||||| | ||| Sbjct 90542 TATCCAAAGATCTCCACG----ACTGGAACAACCGGCTTACCAAGGACGAGCAGTACTTC 90487 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||| | || ||||| ||| || ||| |||||||| || ||||||||||| Sbjct 90486 ATCTCTCACATTCTGGCCTTCTTT-GCTGCCTCTGATGGCATAGTCAACGAGAACCTGGT 90428 Query 1455948 CGGCCGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGA 1456006 | || || | || |||||||| | || ||||| |||| || || || ||||||| Sbjct 90427 TGAGCGTTTCTCTGGC-GAGGTCCAGATCCCTGAGGCTCGTTGCTTCTATGGTTTCCAGA 90369 Query 1456007 TCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGG 1456066 || || || ||||||||||| || |||||||| | ||||||| || ||| | |||| Sbjct 90368 TCATGATGGAGAACATCCACTCCGAGACCTACTCTTTGTTGATCGATACTTACATTAAGG 90309 Query 1456067 ACCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125 | || | | || | || |||| || ||| || ||||| | || | | | Sbjct 90308 AGCCTGCCCAG-CGCACGTACCTGTTCAACGCTATTGACACCATTCCCTGCATACGCCGC 90250 Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGC 1456185 || ||||||||||| | ||||||||| | | || | || || ||||| |||| | Sbjct 90249 AAAGCCGACTGGGCTCTCAAGTGGATCTGCGA-CAGAGAATCAAC-TTTTGCTCAGCGCC 90192 Query 1456186 TCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTG-CGCCATCTTT 1456243 | ||| ||||| || ||||| |||||||| || || || || | || | |||||||| Sbjct 90191 TAATCGCTTTTGCTGCTGTCGAAGGCATCTTCTTTTCTGG-AGCCTTTGCCTCCATCTTT 90133 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||| ||||| || || |||||||| || Sbjct 90132 TGGCTGCGCAAGCGTGGTCTGATGCCCGGCCT 90101 Score = 91.5 bits (100), Expect = 2e-12 Identities = 179/257 (70%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577 |||| |||||| ||| ||||||| || ||||| ||||| | | ||| | || || Sbjct 89996 AGCAAATCATCACCGACGCCGTCGTCATTGAGAAGGAGTTCCTGACTGAGGCTCTTCCT- 89938 Query 1456578 TGGCGCTCA-TCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCG 1456636 || | | | ||||||||||||| | || ||| ||||| ||||| || || |||| Sbjct 89937 TGCGGTTTACTCGGCATGAACGCTGAC-CTGATGAAGCAGTATATTGAGTTC-GTTGCCG 89880 Query 1456637 ACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCA 1456696 |||| || | | ||| || ||| || | ||| ||||| | ||||||| ||| Sbjct 89879 ACCGTCTCTTAGTGGCCCTTGGCAACG-ACAAGGTGTACCGTGCTACCAACCCCTTCGAC 89821 Query 1456697 TGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAG 1456755 | |||||| || || || | |||||||||||||||||||||| || | ||| || Sbjct 89820 TTCATGGAGAACATTTCTCTGGGGGGCAAGACCAACTTTTTCGAGAAACGTGTTGGTGAC 89761 Query 1456756 TACGCCAAGGCCGGCGT 1456772 ||| |||||||| || Sbjct 89760 TACCAGAAGGCCGGTGT 89744 >seq2 Length=318682 Score = 98.7 bits (108), Expect = 1e-14 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 332847 CGATTTGGGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCT 332906 ||| ||| |||| || || ||| || |||||| ||| || ||||| || |||| || Sbjct 37371 CGACTTGTTCGTCGGTAAGACGCGCATAGCGCAAGATAGCGCAACGCGATTGTAGGGGCT 37312 Query 332907 CGATGACCATTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTT 332966 | |||| | | ||| |||||||| | ||||| || || ||||||| | ||| Sbjct 37311 CAATGATCTTGTTAGACTGATTGCAGGCAAATGCAAAGCGGGTAGTATTGGAGTAAATTT 37252 Query 332967 CCATGGT-CGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGG 333025 |||| || |||| | ||||| || ||||| | | || | | ||||||| ||||||||| Sbjct 37251 CCATCGTACGAC-GAAGGGCTTGCTGGGCACCAGAAGTCATGGAGTCGGCTTCGTCGAGG 37193 Query 333026 ATGATGATCTTGTGGCGCCCG 333046 ||||| | ||| ||||| ||| Sbjct 37192 ATGATAAGCTTATGGCGGCCG 37172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177726418834398