Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq53 181 1e-40 seq76 114 2e-20 >seq53 Length=118516 Score = 181 bits (200), Expect = 1e-40 Identities = 556/855 (65%), Gaps = 20/855 (2%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || ||||| |||||||| |||||||||||||| || || ||||| ||| || || || Sbjct 89753 TTCTGGTAGTCACCAACACGTTTCTCGAAAAAGTTGGTCTTGCCCCCCAGAGAAATGTTC 89812 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 |||||||| || || || || || ||| || || | || | | | Sbjct 89813 TCCATGAAGTCGAAGGGGTTGGTAGCACGGTACACCTTGTCGTTGCCAAGGGCCACTAAG 89872 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 | | || ||||| || || || || ||||||| ||| ||||| || |||| Sbjct 89873 AGACGGTCGGCAACGAACTCAATATACTGCTTCATCAGGTCAGCGTTCATGCC---GAGT 89929 Query 39506 TTAACT---GGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATT 39562 | | || |||||||| || || ||||| || || ||| | ||||| || || || Sbjct 89930 AAACCGCAAGGAAGAGCCTCAGTCAGGAACTCCTTCTCAATGACGACGGCGTCGGTGATG 89989 Query 39563 ATCGATGTT--ACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGG 39620 || || | || | || | | || | | | || |||| | ||||| Sbjct 89990 ATT--TGCTCGACAAGTTCCTTGCCAGGGCGGTTGTTCAGGTGGGAGAACAACAGGCAGG 90047 Query 39621 CGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAG 39680 | |||||| || || |||||||| | | ||| | ||||||||||| || || || | Sbjct 90048 CAAAGTCAGTGTGCAGACCCTCATCACGAGAAATCAGCTCGTTAGAAAAGGTCAGGCCGG 90107 Query 39681 GCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGC 39740 |||| ||||||||||| |||||||| |||| ||||| | ||||||||||||||||| Sbjct 90108 GCATCAGACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAGGCTCCAGAAAAGAAGATGC 90167 Query 39741 CTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT-----AT 39795 |||| || || ||||| || | || | || | || ||| || | ||| || Sbjct 90168 CTTCGACAGCAGCAAAAGCGATTAGGCGCTGAGCAAAAGTTGATTC--TCTGTCGCAGAT 90225 Query 39796 CCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 |||||| | ||||| || ||||| || || || || || || ||||| || || Sbjct 90226 CCACTTGAGAGCCCAGTCGGCTTTGCGGCGTATGCAGGGAATGGTGTCAATAGCGTTGAA 90285 Query 39856 GAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTC 39915 || || | || || |||| || ||||| || |||| | || | || Sbjct 90286 CAGGTACGTGCGCTGGGCAGGCTCCTTAATGTAAGTATCGATCAACAAAGAGTAGGTCTC 90345 Query 39916 TGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTG 39975 || |||||||| || ||| ||||| || || || || || | || |||| || || Sbjct 90346 GGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCAACGAGCCTCAGGGATCTG 90405 Query 39976 TACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAA 40035 ||||| | | || | || ||| || || || ||||| |||||| || ||||| Sbjct 90406 GACCTCGCCAGAGAAACGCTCAACCAGGTTCTCGTTGACTATGCCATCAGAGGCAGCAAA 90465 Query 40036 AAATGCCAATACATGTTTAATAAAATATTTTTCATC---GGGTGTCAATTTATTCCAGTC 40092 || |||| | || || || || | || || || | || |||||||| Sbjct 90466 GAAGGCCAGAATGTGAGAGATGAAGTACTGCTCGTCCTTGGTAAGCCGGTTGTTCCAGTC 90525 Query 40093 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTT 40152 | || |||||| |||| ||| | || ||||| ||||| ||||| ||||| ||||| || Sbjct 90526 GTGGAGATCTTTGGATAGATCAATCTCCTCAGCAGTCCAGAACGAGGCCTCAGCCTTCTT 90585 Query 40153 GTACATGTTCCATAT 40167 |||||| | ||| || Sbjct 90586 GTACATCTGCCAGAT 90600 >seq76 Length=103561 Score = 114 bits (126), Expect = 2e-20 Identities = 242/361 (67%), Gaps = 0/361 (0%) Strand=Plus/Minus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 || || ||||| || || ||||||||||| || |||| || || || | || | | | Sbjct 2661 ACACGCTTCATGAACAGGTCGGGAATCCACAGGGCTAGGAACAGGTCGCGGGCACGAATC 2602 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 || || || || || || || ||||| ||||| | | ||| | |||||| || Sbjct 2601 TCCTCCTTGCCGTGGTTCTTGCGTAGGTCGAGGAACTCGAAGACATCGGCATGCCACGGC 2542 Query 69715 TCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCA 69774 ||||| || || || | | |||| || || || || || ||||| || | || | ||| Sbjct 2541 TCTAGGTAGATAGCAAAGGCTCCAGGGCGCTTGTTGCCACCCTGGTCAACATAGCGGGCG 2482 Query 69775 GTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAA 69834 ||||| || |||| | |||||| || | || || || || | || || || |||| | Sbjct 2481 GTGTTGTTGAAGACGCGCAGCATGGGCACGATGCCGTTTGACGTGCCGTTAGTGCCAGCA 2422 Query 69835 ATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTA 69894 || || || | ||||| ||| | || || || || || ||||| || Sbjct 2421 ATGTACGAGCCGGTGGCGCGGATACGGTGGACGTTCAGGCCAATACCACCGGCCATCTTG 2362 Query 69895 GAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATG 69954 ||||| | ||||||| |||| || || || |||||||| ||||| ||||| ||||| Sbjct 2361 GAGATCATAGCACAAGTCTTCAGCGTATCGTAGATACCCTCAATGCTGTCATCCTTCATG 2302 Query 69955 T 69955 | Sbjct 2301 T 2301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686901252589560