Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq60 178 4e-39 seq249 154 4e-32 seq309 125 2e-23 seq170 125 2e-23 seq404 107 6e-18 seq270 86.0 2e-11 >seq60 Length=113822 Score = 178 bits (196), Expect = 4e-39 Identities = 415/616 (67%), Gaps = 9/616 (1%) Strand=Plus/Plus Query 349282 AGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATTGGTGA 349341 ||||||| | | || || || || || || || || || |||||| | | ||||| Sbjct 50009 AGGTAACCGTATCACTCCTTCGTATGTCGCCTTCACTGAGGAGGAGCGTCTCGTCGGTGA 50068 Query 349342 TTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACT 349401 | || || || || || | || || || | || |||||||| |||| ||||| || Sbjct 50069 CGCCGCCAAGAACCAGGCCCCCGCCAACCCTATCAACACGGTTTTCGATGTCAAGCGTCT 50128 Query 349402 TATTGGTAG-AAGTTTTTCTGACAAATCTACACAATCTGATCTAAAACATTTTCCTTTTA 349460 |||||| | ||||| | || || | || ||||| | || || || |||| | Sbjct 50129 CATTGGTCGCAAGTTCAAC-GAGAAGGAGATCCAGGCTGATATTAAGCACTTCCCTTACA 50187 Query 349461 CTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGA-ACAA 349519 ||| | ||| | | | || || || | || ||||||| | || ||||| || | Sbjct 50188 AGGTTAT--CAACA-AGGATGGCAAGCCTTTCATCAAGGTTGACTTCAAGGGTGACACCA 50244 Query 349520 AAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCT 349579 | || | | | ||||| || || || | ||| || ||| || |||||||| ||||| Sbjct 50245 AGACCTTCTCT-CCCGAGGAGATCTCTGCCATGATTCTAGGCAAGATGAAGGAGGTTGCT 50303 Query 349580 GAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAAT 349639 || | || ||||| | || || || | ||||| ||||||| || ||||| || || Sbjct 50304 GAGTCTTACCTAGGTAAGACTGTCACCCACGCTGTCGTTACTGTTCCCGCCTACTTCAAC 50363 Query 349640 GATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGA 349699 |||||||||||| || || || |||||||||| |||||| || | || |||| | Sbjct 50364 GATGCCCAGCGTCAAGCTACCAAGGATGCTGGCATCATTGCTGGTCTGAACATTCTCCGT 50423 Query 349700 ATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAA 349759 || | || || ||||||||||| || || || || || |||||||| | ||| Sbjct 50424 ATTGTCAACGAGCCCACTGCTGCCGCCATCGCCTACGGTCTTGATAAGACCGGTGCTGGT 50483 Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 || | || | | | ||| ||||||||||||| |||||||| || | || | Sbjct 50484 GAGCGCCAAATCATCGTCTACGATCTAGGTGGTGGTACCTTTGATGTTTCTTTGCTGTCC 50543 Query 349820 CTTGAAGAG-GGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGA 349878 ||| |||| || | ||||| ||| || ||||||||||| || || |||||||| || Sbjct 50544 ATTG-AGAGTGGCGTCTTTGAGGTTCTGGCTACTGCTGGTGACACTCACCTTGGTGGTGA 50602 Query 349879 AGATTTTGATAATCGT 349894 ||||| ||| | ||| Sbjct 50603 GGATTTCGATCAGCGT 50618 >seq249 Length=46353 Score = 154 bits (170), Expect = 4e-32 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| ||||| ||||| ||||| ||||| || || | Sbjct 8121 TTTGCATACCACCACGCAGACGAAGAACCAGATGGAGAGTGGACTCCTTTTGGATGTTGT 8062 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | || || ||||| || || || || || ||||| || ||||| ||||||| Sbjct 8061 AGTCAGAGAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGAT 8002 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || || || || || || || || | ||| ||||| ||||| | ||| || | Sbjct 8001 CCGGAGGGATACCCTCCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGAGG 7942 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||| ||||| || || | ||||||||||| || ||||| || Sbjct 7941 ATTCGACTTCTAGGGTGATGGTCTTTCCGGTAAGGGTTTTGAC 7899 Score = 154 bits (170), Expect = 4e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| ||||| ||||| ||||| |||||||| || | Sbjct 8349 TTTGCATACCACCACGCAGACGAAGAACCAGATGGAGAGTGGACTCCTTTTGAATGTTGT 8290 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || || || || || ||||| || ||||| ||||||| Sbjct 8289 AGTCGGAGAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGAT 8230 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || || || || || || || || | ||| ||||| ||||| | ||| || | Sbjct 8229 CTGGAGGGATACCCTCCTTGTCTTGGATCTTCGATTTGACATTGTCAATAGTATCGGAGG 8170 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| || || | || || || || || || || |||||||| ||||| Sbjct 8169 ATTCGACTTCTAGGGTGATGGTTTTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 8115 Score = 131 bits (144), Expect = 5e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||||||||| || || || || || || Sbjct 7824 CATACCACCACGCAGGCGGAGGACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 7765 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || |||||||| ||||| || || |||||||| ||||| || || Sbjct 7764 GGACAGGGTGCGACCGTCCTCAAGTTGCTTTCCGGCGAAAATTAGACGCTGCTGGTCTGG 7705 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || ||||||||||| || | || ||||| || || | || || | || Sbjct 7704 GGGAATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAAGACTC 7645 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTG 140718 || ||||| || | ||||| ||||||| || Sbjct 7644 GACCTCAAGAGTGATGGTCTTGCCGGTTACTG 7613 >seq309 Length=35318 Score = 125 bits (138), Expect = 2e-23 Identities = 226/328 (69%), Gaps = 2/328 (1%) Strand=Plus/Plus Query 378120 ATCAAATCCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGT 378179 ||||| ||||| || || || ||||||||| || | || | ||| | ||||| Sbjct 8879 ATCAAGACCATCCTCACCGTACAGGAATTGAACGATATCTCCTAGAGAGTTACGAACAGT 8938 Query 378180 CATATCATATCTAACCATTAA-ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAAC 378238 |||||| || | || ||| |||||| | || || | || || || ||| || | Sbjct 8939 TCCATCATA-CTTAGCACTAACATCTTCAAGAGCCTTGACTAGACGACGTTGAATGTATC 8997 Query 378239 CAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGA 378298 |||||| ||| || || ||||||||||| ||||| |||||||| |||| || |||| Sbjct 8998 CAGTTTCGGCAGTCTTGACAGCAGTATCAATCAAACCTTCACGACCAGCCATGGCGTGGA 9057 Query 378299 AGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGC 378358 |||| || || | || ||||| |||| || | || | |||| ||| || | || Sbjct 9058 AGAAGAACTCGCTTGGCGTAAGACCACGAAGGTAAGAGTTTTCAACAAAGCCACGTGACT 9117 Query 378359 CTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAA 378418 | || |||| ||||| ||| || | ||||| | ||||| | || || ||| | |||| Sbjct 9118 CGGGAGAATAATCATCTTTGGTGAAGTGAGGAAGCGTACGGTACTTGAATCCAAAGGGAA 9177 Query 378419 TTCGTTTTCCATCAACATTCTGTTGACC 378446 | || ||||| || || | |||||||| Sbjct 9178 TACGCTTTCCTTCGACGATTTGTTGACC 9205 Score = 96.9 bits (106), Expect = 1e-14 Identities = 118/158 (75%), Gaps = 5/158 (3%) Strand=Plus/Plus Query 377439 TGATAATATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACC 377498 ||| ||| || |||||| || || |||||| | ||||| ||| ||||| | ||||| Sbjct 8176 TGAGAAT-TTCCTTCAAA-CGGGGGACACCAAGAGTAACGTTC---TTAGAAGACACACC 8230 Query 377499 AGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGC 377558 |||||| |||||||| || || || | || |||| ||||| ||||| ||||| || || Sbjct 8231 AGCAAAATGGAAAGTGTTGAGCGTCATCTGCGTAGCAGGCTCTCCAATGGACTGAGCAGC 8290 Query 377559 AATAACGCCAACCATTTCTCCAGGATTGACAATAGCCT 377596 | ||||||||||| || || || ||| || ||||| Sbjct 8291 CAGCACGCCAACCATCTCACCGGGGCTGATAAAAGCCT 8328 >seq170 Length=65362 Score = 125 bits (138), Expect = 2e-23 Identities = 261/389 (67%), Gaps = 0/389 (0%) Strand=Plus/Plus Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATG 349552 ||||||||||| | || || || || || ||| ||||| || || || || ||| Sbjct 45978 ATTGAGGTTGAGTTCAAGGGCGAGACCAAGCAGTTTACCCCCGAGGAGATCTCCTCTATG 46037 Query 349553 GTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCT 349612 ||| | | || ||| || | ||||| | || | ||| || || | | ||| Sbjct 46038 GTTCTGATCAAGATGCGTGAGACCGCTGAGTCGTACCTTGGTACCACCGTTAACAACGCT 46097 Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672 ||||| ||||| || ||||| || || ||| | |||||| || || || || |||| Sbjct 46098 GTTATCACTGTTCCTGCCTACTTCAACGATTCTCAGCGTCAGGCTACCAAGGACTCTGGT 46157 Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732 ||||| || | ||||| | | || ||||| || |||||||| || || ||||| Sbjct 46158 CTTATTGCCGGTCTGAATGTCTTGCGTATCATTAACGAGCCCACTGCCGCTGCCATTGCC 46217 Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 || || |||||||| | | || || || | || || || ||| | |||||| Sbjct 46218 TACGGTCTTGATAAGAAGGTCGAGGGTGAGCGCAACGTCCTGATCTTCGATCTGGGTGGT 46277 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 || ||||| ||||| || || | || |||| || || || || || || || | ||| Sbjct 46278 GGCACTTTCGATGTCTCGCTGTTGACCATTGAGGATGGTATCTTCGAGGTCAAGTCCACT 46337 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGA 349881 || ||||| || ||||| ||||| ||||| Sbjct 46338 GCCGGTGACACTCATCTGGGTGGTGAAGA 46366 >seq404 Length=24851 Score = 107 bits (118), Expect = 6e-18 Identities = 153/213 (72%), Gaps = 7/213 (3%) Strand=Plus/Minus Query 140528 AACAAGATGAAGAGTA-GACT--CTTTTTGAATATTATAATCAGATAATGTTCGCCCATC 140584 |||||||||| || |||| | || || || || || || || | || || ||||| Sbjct 18482 AACAAGATGA----TATGACTGACCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 18427 Query 140585 TTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATC 140644 || || || || ||||| ||||| || || || ||||| || ||||| || || ||||| Sbjct 18426 CTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTATC 18367 Query 140645 CTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGT 140704 ||| || |||| || ||||| || || | || || | ||||| ||||| || | || Sbjct 18366 CTGGATCTTAGACTTGACATTGTCGATGGTGTCTGAGGACTCAACCTCAAGGGTGATCGT 18307 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || || || || ||||||||||| Sbjct 18306 CTTACCCGTAAGGGTCTTGACGAAAATCTGCAT 18274 >seq270 Length=41675 Score = 86.0 bits (94), Expect = 2e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 266973 ATCGGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCCT 267032 || || ||||| ||| | ||| |||||||| ||||||||||||||| | | || Sbjct 23781 ATTGGTGATAAGTTTGCGTCTCGTCACGGACAGAAAGGTACCATTGGTGTAACTTATCGC 23840 Query 267033 GAAGAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCAT 267092 ||||| ||||||| || | || || || | || || |||||||| || ||||| Sbjct 23841 CAAGAAGATATGCCGTTCACCTGCGAGGGCATCACTCCCGACATTATTATCAACCCTCAC 23900 Query 267093 GCTATTCCTAGTCGTATGACAATTG 267117 ||||||||| ||||||||| |||| Sbjct 23901 GCTATTCCTTCTCGTATGACCATTG 23925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515237334920837