Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq249 105 5e-18 >seq249 Length=46353 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||||| ||||| ||| || || | || |||||| | || Sbjct 8115 ATGCAAATTTTTGTCAAGACTCTCACTGGCAAAACCATCACCCTAGAAGTCGAATCCTCC 8174 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| |||||| || || ||||| || ||| | || || | Sbjct 8175 GATACTATTGACAAT--GTCAAATCGAAGATCCAAGACAAGGAGGGTATCCCTCCAGATC 8232 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | ||||||||||| || || |||| || | || | | | ||||| |||| Sbjct 8233 AGCAGCGTCTGATTTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTCTCCGACTACA 8292 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| ||| |||| | ||| ||||| | ||| ||||||| || Sbjct 8293 ACATTCAAAAGGAGTCCACTCTCCATCTGGTTCTTCGTCTGCGTGGTGG 8341 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 27802 GTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACCGA--CGATGTAC 27859 || ||||| ||||| || || || || | || |||||| | |||| | || || Sbjct 7899 GTCAAAACCCTTACCGGAAAGACCATCACCCTAGAAGTCGAATCCTCCGATACTATTGAC 7958 Query 27860 AATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAA 27919 ||| |||||| || || ||||| || ||| | || ||| ||||| || | | Sbjct 7959 AAT--GTCAAATCGAAGATCCAAGACAAGGAGGGTATCCCTCCGGATCAGCAGCGTCTGA 8016 Query 27920 TTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAG 27979 |||||||||| || || |||| || | || | | | || || |||||||||||||| | Sbjct 8017 TTTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTCTCTGACTACAACATCCAAAAGG 8076 Query 27980 AGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||| | ||| ||||| | ||| ||||||| || Sbjct 8077 AGTCCACTCTCCATCTGGTTCTTCGTCTGCGTGGTGG 8113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355858587712833