Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq249 122 6e-23 seq404 87.8 1e-12 >seq249 Length=46353 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || ||||| || ||||| ||||| || ||||| || ||| | Sbjct 8115 ATGCAAATTTTTGTCAAGACTCTCACTGGCAAAACCATCACCCTAGAAGTCGAATCCTCC 8174 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | ||| | || | | ||||| || ||| | || |||||||| Sbjct 8175 GATACTATTGACAATGTCAAATCGAAGA-TCCAAGACAAGGAGGGTATCCCTCCAGATCA 8233 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || ||||| || | || || | ||| ||||| Sbjct 8234 GCAGCGTCTGATTTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTCTCCGACTACAA 8293 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||| |||||||| | ||| | ||| Sbjct 8294 CATTCAAAAGGAGTCCACTCTCCATCTGGTT 8324 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || ||||| || ||||| ||||| || || ||||| || | Sbjct 8343 ATGCAAATCTTCGTCAAGACTCTCACTGGCAAAACCATCACCCTTGAGGTTGAGTCTTCT 8402 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | ||| | || | | || || || ||| | || |||||||| Sbjct 8403 GATACTATTGACAATGTCAAATCGAAGA-TCCAAGATAAGGAGGGTATTCCCCCAGATCA 8461 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || |||| || | || ||| | || ||||| Sbjct 8462 GCAGCGTCTGATTTTTGCCGGCAAGCAGTTGGAGGATGGTCGTACTCTCTCTGACTACAA 8521 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| ||||| || ||||| | ||| | | |||| ||||| Sbjct 8522 CATCCAAAAGGAGTCTACCCTACATCTGGTTCTGCGTCTGCGTGGAGG 8569 Score = 107 bits (118), Expect = 1e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23621 TCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTG 23680 |||| |||||||| || ||||| || ||||| || ||||| || ||| | || ||| ||| Sbjct 7897 TCGTCAAAACCCTTACCGGAAAGACCATCACCCTAGAAGTCGAATCCTCCGATACTATTG 7956 Query 23681 A-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTA 23739 | ||| | ||| | || | | ||||| || ||| | || || ||||| |||||| | Sbjct 7957 ACAATGTCAAATCGAAGA-TCCAAGACAAGGAGGGTATCCCTCCGGATCAGCAGCGTCTG 8015 Query 23740 ATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAA 23799 || ||||||||||| || ||||| || | || || | || |||||||| ||||| Sbjct 8016 ATTTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTCTCTGACTACAACATCCAAAAG 8075 Query 23800 GAGTCCACATTACATTTAGTT 23820 |||||||| | ||| | ||| Sbjct 8076 GAGTCCACTCTCCATCTGGTT 8096 >seq404 Length=24851 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| ||||| || |||||||| || || ||||| ||| Sbjct 18271 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTTGAGTCC 18330 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || || || || || || | || || || Sbjct 18331 TCAGACACCATCGACAATGTCAAGTC-TAAGATCCAGGATAAGGAGGGCATTCCCCCGGA 18389 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||||||| | || || || ||||| || || || || | ||||| | ||| || Sbjct 18390 TCAACAGCGCCTGATCTTCGCTGGCAAGCAGCTAGAGGATGGCCGCACCCTGTCCGACTA 18449 Query 23787 CAACATACAAAA 23798 |||||| || || Sbjct 18450 CAACATCCAGAA 18461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338005978966532