Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20laricicola_20[genbank_20GCA_5F001640655.1_202016- 05-09] 879 sequences; 32,692,340 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq53 156 4e-33 >seq53 Length=118516 Score = 156 bits (172), Expect = 4e-33 Identities = 374/561 (67%), Gaps = 11/561 (2%) Strand=Plus/Plus Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAA 4598 ||||| | || ||||| ||| |||| ||| || || | |||||| ||||||||| Sbjct 90035 AACAACAGGCAGGCAAAGTCAGTGTGCAGACCCTCATCACGAGAAATCAGCTCGTTAGAA 90094 Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 || || | |||||||| | ||| | ||| |||||||| || | |||||| | ||| Sbjct 90095 AAGGTCAGGCCGGGCATCAGACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAGGCTCCA 90154 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCG-GGACCCGAACGAGCTGGC 4717 |||||||| |||||||| || || ||||| || | || || || | || | | | Sbjct 90155 GAAAAGAAGATGCCTTCGACAGCAGCAAAAGCGATTAGGCGCTGAGCAAAAGTTGAT-TC 90213 Query 4718 TTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTA 4777 | |||| ||||| || | ||||||| ||||| | ||| ||||| |||| Sbjct 90214 TCTGTCGCAGATCCACTTGAGAGCCCAGTCGGCTTTGCGGCGTATGCAGGGAATGGTGTC 90273 Query 4778 TATAGCGTTAAATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAG 4834 |||||||| || | | | | | || || || | ||| ||||| || || | Sbjct 90274 AATAGCGTTGAACAGGTACGTGCGCTGGGCA---GGCTCCTTAATGTAAGTATCGATCAA 90330 Query 4835 TAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCT 4894 | || | || || || || || || || ||||| || || || ||||| | Sbjct 90331 CAAAGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCAACG 90390 Query 4895 AGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACC 4954 ||| || | | || || ||| | | || | || || | ||| ||||| ||||| || Sbjct 90391 AGCCTCAGGGATCTGGACCTCGCCAGAGAAACGCTCAACCAGGTTCTCGTTGACTATGCC 90450 Query 4955 GTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAA- 5013 ||| ||| ||||| || |||| || ||||| || |||||||| ||||| ||| Sbjct 90451 ATCAGAGGCAGCAAAGAAGGCCAGAATGTGAGAGATGAAGTACTGCTCGTCCTTGGTAAG 90510 Query 5014 --GTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGA 5071 | || ||||||| | | | |||||| | || ||||| || ||| ||||||| ||||| Sbjct 90511 CCGGTTGTTCCAGTCGTGGAGATCTTTGGATAGATCAATCTCCTCAGCAGTCCAGAACGA 90570 Query 5072 CGCTTCCGCTTTTTTGTACAT 5092 || || || || |||||||| Sbjct 90571 GGCCTCAGCCTTCTTGTACAT 90591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427045025097707