Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endoconidiophora_20polonica_20[genbank_20GCA_5F001856765.1_202016- 10-16] 913 sequences; 32,456,232 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq425 168 1e-36 seq142 123 4e-23 seq83 87.8 3e-12 >seq425 Length=119061 Score = 168 bits (186), Expect = 1e-36 Identities = 386/572 (67%), Gaps = 12/572 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | ||||| || |||||| ||||||| || ||||| | || ||| | ||||| Sbjct 46128 ATCTGGCAGATGTATAAGAAGGCTGAGGCCTCGTTCTGGACTGCTGAGGAGATTGATCTA 46069 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||| || || |||| ||| | | || | || | |||| | || || || Sbjct 46068 TCCAAAGATCTCCACGACTGGAACAACCGGCTTACCAAGGACGAGCAGTACTTCATCTCT 46009 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 |||||| ||||||||||||| | ||| ||||| || |||||||| || || ||||| || Sbjct 46008 CACATTCTGGCCTTCTTTGCTGCCTCTGATGGCATTGTCAACGAGAACCTGGTTGA-GCG 45950 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 |||||| ||| | || || |||| ||| ||||| || || ||||| ||||||| Sbjct 45949 TTTCTCTGGCGAGGTCCAGATCCCTGAGG-CTCGTTGCTTCTATGGTTTCCAGATCATGA 45891 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---TC 125313 | |||||| | ||||| || | |||||| |||| || | || || || | Sbjct 45890 TGGAGAACATCCACTCCGAGACCTACTCTTTGTTGATCGATACTTATATCAAGGAGCCTG 45831 Query 125314 CGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 | || || | || || || ||||| || ||||| | || | ||||| || | Sbjct 45830 CCCAGCGCACGTAC---CTGTTCAACGCTATTGACACCATTCCCTGCATACGCCGCAAAG 45774 Query 125374 CTCAATGGGTGATTCGGTGGATCGATGAC-GACAAGTCTTCGTACGCCGACAGACTGGTG 125432 | | |||| | |||||| ||| || || || | | || | | || | Sbjct 45773 CCGACTGGGCTCTCAAATGGATCTGCGACAGAGAA-TCAACTTTTGCTCAGCGCCTAATC 45715 Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || || || ||||| ||||||||||||||||| || ||||| | ||||||||||| Sbjct 45714 GCTTTTGCTGCCGTCGAGGGCATCTTCTTTTCTGGAGCCTTTGCCTCTATCTTTTGGCTG 45655 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 ||||| || || |||||||| ||||| ||||||| | || || || || ||| Sbjct 45654 CGCAAGCGTGGTCTGATGCCCGGCCTGACCTTTTCTAACGAGCTGATTTCCCGTGATGAG 45595 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTT 125584 || || ||| |||||||||| ||| |||| Sbjct 45594 GGTCTGCACACTGACTTTGCCTGCCTATTGTT 45563 >seq142 Length=98154 Score = 123 bits (136), Expect = 4e-23 Identities = 298/446 (67%), Gaps = 4/446 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | || ||||| | || || ||||| || || Sbjct 2531 CAGGGTGGCAACAAGCGCCCTGGAGCCTTTGCTATCTACCTAGAGCCGTGGCATGCCGAT 2590 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || |||| | ||||| ||| ||| || ||| || ||| | ||| Sbjct 2591 GTCTTCGAGTTCCTCGACCTACGCAAGAACCACGGCAAGGAGGAGATTCGTGCCCGCGAC 2650 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||| || || ||| | || || ||||||||||||| ||| | | | | || Sbjct 2651 CTGTTCCTAGCCCTGTGGATTCCCGACCTGTTCATGAAGCGTGTCGAGAAGAACGCCAAC 2710 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| || || ||||||||| |||| |||| || || ||||| Sbjct 2711 TGGACACTCATGTGCCCCAACGAGTGCCCCGGTCTGGCCGACTGCTACGGTGACGAGTTC 2770 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174 ||||| |||| |||||| |||||||| || || | || | || | Sbjct 2771 GAGGCTCTGTACGAAAAGTACGAGAGCGAGGGCCGCGGTCGCCTCACCA-TCAAGGC-CC 2828 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| || ||| | |||||| | ||| || ||||| |||| |||| ||| || | Sbjct 2829 AGAAGCTATGGTACGCCATCCTTGAGGCCCAAACCGAGACCGGAAACCCGTTCATGCTGT 2888 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||||||| || || | || |||||||| || ||||||| || |||||| Sbjct 2889 ACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACCTGGGCACTATTCGCAGCTCCA 2948 Query 97294 ATCTGTGCACGGAAATTGTAGAGTAC 97319 | |||||||| || || | |||||| Sbjct 2949 ACCTGTGCACCGAGATCATCGAGTAC 2974 >seq83 Length=83120 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 |||||||| || || ||||| || ||||| ||| | || | ||| | | || || || Sbjct 80677 GGCGATCTAGGCCCTGTGTATGGCTTCCAATGGCGCCATTTCGGCGCGGAATACGTCGA- 80735 Query 70127 TGCG-AGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTC 70184 ||| | || || ||| |||| ||||| || ||||| | ||||| |||| | | | Sbjct 80736 TGCTCAAACGGATTATACGGGCCAGGGCGTCGATCAGCTCGCAGAGG-TCATCTATAAGC 80794 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | ||||| || ||| ||| | | ||| | ||| || | ||||| ||||| ||| | Sbjct 80795 TGAAGACTAACCCATATGATCGTCGCATCATCATGAGCGCGTGGAACCCTGCGGATCTCA 80854 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC 70288 | | ||||| || || ||||||||| |||||| ||||||||||| Sbjct 80855 AGAAGATGGCGCTGCCGCCGTGTCACATGTTTG-CTCAGTTTTAC 80898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741050742661880