Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq521 104 5e-17 seq121 84.2 5e-11 >seq521 Length=16305 Score = 104 bits (114), Expect = 5e-17 Identities = 174/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445 ||||| || || || |||| | ||| | ||||| | || ||| | || ||| Sbjct 13715 ATCATCACCGACGCTGTTGGCATCGAGCAAGAGTTTCTGACCGAGGCTCTGCCGTGTGCT 13774 Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || | ||||||||||| ||| ||| || || || ||||| || ||||| ||| | Sbjct 13775 CTCCTAGGCATGAACGCCACACTAATGAAGCAATATATTGAATTTGTCGCCGATCGCCTA 13834 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 || ||||| |||||| |||| || || ||||| | |||||||| | || |||||| Sbjct 13835 TTGGTTGCTCTTGGTAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAG 13894 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGG 230625 |||||| | || ||||| ||||||||||| ||||| || | || ||||| | | Sbjct 13895 AACATTTCCTTGGGTGGTAAGACAAACTTCTTCGAGAAGCGAGTTGGAGAATATCAAAAG 13954 Query 230626 CCTGGTGTGATG 230637 |||| || ||| Sbjct 13955 GCTGGCGTTATG 13966 >seq121 Length=70861 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 318996 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 319055 ||| |||||| |||||| ||||| |||| |||||||| || ||| | ||||| || Sbjct 56159 GTCGTCACCGTTGGCATATCGCCACTGGAGGTACTGGTTCGGGGTCTTCTCAAGGTGCAT 56100 Query 319056 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 319115 ||| | ||| | | ||| ||||| | |||| | | |||| || ||||||||| Sbjct 56099 CTCCACGTGCTCCAGAGCGTGCTGCTTGATGTAACCGATGCGCAGGTTGGGATGCTTCTC 56040 Query 319116 AACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCC 319175 || | || |||||| ||| || ||||||| ||| ||||||||| || || Sbjct 56039 GACTTTGCCTGTGGTGGGGATGCTTTCACCGGTGAGCAACTTGATGAGGGTGGACTTGCC 55980 Query 319176 CGCACCGTT 319184 ||||||||| Sbjct 55979 CGCACCGTT 55971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057795619243220