Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq521 113 5e-20 >seq521 Length=16305 Score = 113 bits (124), Expect = 5e-20 Identities = 317/480 (66%), Gaps = 10/480 (2%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| || || | ||| || || ||||| ||||| || || || | | || || |||| Sbjct 13952 TTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTACCACCCAAGGAAATGTTCT 13893 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||||||||| || || || | | | ||| || || || || | | | || Sbjct 13892 CCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAAGAGCAACCAATA 13833 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 | ||| || |||||||| |||||||| ||||| | | |||||| |||| ||| Sbjct 13832 GGCGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATGCCTAGGAGA- 13774 Query 16854 GTAC-CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 | || ||| ||||| || |||| ||| |||||| || |||| || || | || ||| Sbjct 13773 GCACACGGCAGAGCCTCGGTCAGAAACTCTTGCTCGATGCCAACAGCGTCGGTGATGATA 13714 Query 16913 --CTAGC-AACTCG-TTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGC 16968 || | || | | || || | ||||| |||||||| || ||||||||| Sbjct 13713 TCCTGGATAATTTGCTTGCTGGCTCGGTGC----TTAAGATGCGAGTGCAACAGACATGC 13658 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 || || || || ||||| || | | ||||||||||||||| || || | ||||| Sbjct 13657 AAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGGCCGGG 13598 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 |||| || || ||||| | ||| || |||| ||| || | || ||||| || || Sbjct 13597 CATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGATGCC 13538 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCA 17148 ||| || | || || || | || || | |||| | | | || |||| ||||||| Sbjct 13537 CTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGGAATCCTTGTCCTGAATCCA 13478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517532053243920