Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq521 125 7e-24 >seq521 Length=16305 Score = 125 bits (138), Expect = 7e-24 Identities = 196/280 (70%), Gaps = 3/280 (1%) Strand=Plus/Minus Query 16479 TATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCAT 16538 |||||||||| | | ||| |||| ||||| || ||||| || ||||||||||||| Sbjct 13328 TATCAATCAGGAGAGAGTATGTTTCAGAGTGAATATTCTCCATCATGATCTGAAATCCAT 13269 Query 16539 AGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCAT 16598 ||||||| |||||||||| | || || || || || || || |||||| |||| Sbjct 13268 AGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCAAGCAGGTTTTCAT 13209 Query 16599 TCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGT 16658 | || || |||||| |||||||| || ||||| ||||| ||||| ||||| |||| Sbjct 13208 TGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAGATGAAGTATTTCTCGT 13149 Query 16659 CAGATGTAAGA---ATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCG 16715 | | ||| | | |||||| | || || ||||| | ||| | || || | || Sbjct 13148 CGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCCTTGGACAGATCGATCTCCTCGGCCG 13089 Query 16716 TCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 |||| || || | ||||| || ||||||| ||| || Sbjct 13088 TCCAGAAAGAGGCTTCGGCCTTCTTGTACATTTGCCAGAT 13049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511401013728080