Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq6 127 2e-24 >seq6 Length=213420 Score = 127 bits (140), Expect = 2e-24 Identities = 193/275 (70%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 145891 TGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGC 145950 ||||||||||||| ||||||| | | || ||| | |||||| || | | || || | Sbjct 168932 TGGCAGGGCGGCAAGGCCATGAGGTGTAGATCCCGTGCGTTCCACGCACTCATGATGATC 168991 Query 145951 CTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCC 146010 | |||| | || || ||||||||| | |||| || ||||||||| || ||| Sbjct 168992 CGCCTGTCGTACGGCTTGTTCTTGATCTTGTCAATCACATCGGCGAGCTGGTCGACTCCC 169051 Query 146011 TGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAAC 146070 | || ||| || ||||||| || |||||| | || || ||||||| ||| ||||| Sbjct 169052 TTGCCGGTGTAGTCCGTCTTGGCATCGACGTACTCTGCGCCAAAGTGCCGCCATTGGAAG 169111 Query 146071 CCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAG 146130 ||||| ||||| ||||| || || || | ||| | || || | ||||||| Sbjct 169112 CCGTACACGGGTCCCAGATCGCCTACTTCACGGTGTGCGAGACCCAGATTGTCGAGGAAC 169171 Query 146131 TCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC 146165 || ||||| || ||| ||||||| || |||||||| Sbjct 169172 TCGCGGGATCCATTGCCGTCCCATATTTTGACGCC 169206 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 145704 GTAGACGTGCGCGTCCCCCAGGACGTGGATGAAG-TCCCCGGGCTCGAGGCCCGTGAGGT 145762 ||||| ||||||||| |||| ||||||| ||| | | || ||| | | | | | | Sbjct 168664 GTAGATGTGCGCGTCGCCCATGACGTGGGTGAGGCTGCCGGGGACCAAATCGCACGCA-T 168722 Query 145763 GGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCA 145822 | |||| ||||| || || || | |||||| || |||||||||||||| ||||| |||| Sbjct 168723 GTGCGATCATGTGTGTGAGGAGTGCGTAGCTAGCGATGTTGAAGGGCACGCCCAGGCCCA 168782 Query 145823 TGTCCCCCGAGCGCTGGTACAGCTGGCAG 145851 |||| | || || ||||||| || ||| Sbjct 168783 TGTCGCATGATCGTTGGTACAATTGACAG 168811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590061354739760