Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15]
2,094 sequences; 34,423,103 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq6 127 2e-24
>seq6
Length=213420
Score = 127 bits (140), Expect = 2e-24
Identities = 193/275 (70%), Gaps = 0/275 (0%)
Strand=Plus/Plus
Query 145891 TGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGC 145950
||||||||||||| ||||||| | | || ||| | |||||| || | | || || |
Sbjct 168932 TGGCAGGGCGGCAAGGCCATGAGGTGTAGATCCCGTGCGTTCCACGCACTCATGATGATC 168991
Query 145951 CTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCC 146010
| |||| | || || ||||||||| | |||| || ||||||||| || |||
Sbjct 168992 CGCCTGTCGTACGGCTTGTTCTTGATCTTGTCAATCACATCGGCGAGCTGGTCGACTCCC 169051
Query 146011 TGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAAC 146070
| || ||| || ||||||| || |||||| | || || ||||||| ||| |||||
Sbjct 169052 TTGCCGGTGTAGTCCGTCTTGGCATCGACGTACTCTGCGCCAAAGTGCCGCCATTGGAAG 169111
Query 146071 CCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAG 146130
||||| ||||| ||||| || || || | ||| | || || | |||||||
Sbjct 169112 CCGTACACGGGTCCCAGATCGCCTACTTCACGGTGTGCGAGACCCAGATTGTCGAGGAAC 169171
Query 146131 TCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC 146165
|| ||||| || ||| ||||||| || ||||||||
Sbjct 169172 TCGCGGGATCCATTGCCGTCCCATATTTTGACGCC 169206
Score = 86.0 bits (94), Expect = 7e-12
Identities = 110/149 (74%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 145704 GTAGACGTGCGCGTCCCCCAGGACGTGGATGAAG-TCCCCGGGCTCGAGGCCCGTGAGGT 145762
||||| ||||||||| |||| ||||||| ||| | | || ||| | | | | | |
Sbjct 168664 GTAGATGTGCGCGTCGCCCATGACGTGGGTGAGGCTGCCGGGGACCAAATCGCACGCA-T 168722
Query 145763 GGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCA 145822
| |||| ||||| || || || | |||||| || |||||||||||||| ||||| ||||
Sbjct 168723 GTGCGATCATGTGTGTGAGGAGTGCGTAGCTAGCGATGTTGAAGGGCACGCCCAGGCCCA 168782
Query 145823 TGTCCCCCGAGCGCTGGTACAGCTGGCAG 145851
|||| | || || ||||||| || |||
Sbjct 168783 TGTCGCATGATCGTTGGTACAATTGACAG 168811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590061354739760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |