Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq13 113 4e-20 seq54 84.2 2e-11 >seq13 Length=187677 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| ||||| ||| |||||||| ||||| || ||||| | | Sbjct 68190 CCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 68131 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | ||||| ||||| || || ||| | || |||| ||||||||| ||| Sbjct 68130 AAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 68071 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||| || || | ||| ||||| | || | Sbjct 68070 ATGCCTTCCTTGTCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACT 68011 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||| |||||||| || || || ||||| || || ||||| Sbjct 68010 TCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 67964 >seq54 Length=115083 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 |||| |||||||| ||||| | ||||||| | ||||||| ||||| ||||| || | | Sbjct 30704 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 30763 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | | || ||||||||| ||| | ||| |||||||| ||| || || || | | Sbjct 30764 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 30823 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 ||| || || || ||| || | ||| ||||||||||| || | || ||||| | Sbjct 30824 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGA 30883 Query 21166 A 21166 | Sbjct 30884 A 30884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422248423681304