Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq104 150 2e-31 seq521 141 1e-28 seq13 129 6e-25 seq54 120 3e-22 >seq104 Length=76965 Score = 150 bits (166), Expect = 2e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| || || |||||| | || || || | Sbjct 66672 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCT 66731 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | ||||| || || | ||||| |||||||| ||| ||||| Sbjct 66732 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 66791 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||||||||| |||| || || || ||||| || || | || ||||| | ||||||| Sbjct 66792 CAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACCCTGAGCGACTAC 66851 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 ||||||||||||||| ||| ||||| | ||| ||||| || | || || || Sbjct 66852 AACATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGCCTGCGTGGTGGTGG 66904 >seq521 Length=16305 Score = 141 bits (156), Expect = 1e-28 Identities = 187/259 (72%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| |||||||| || || |||||||| | ||||||| | || ||| Sbjct 13049 ATCTGGCAAATGTACAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAGGAGATCGATCTG 13108 Query 116696 TCCAAGGACACGAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| | ||| ||| | || ||| |||| ||||| | |||||| Sbjct 13109 TCCAAGGACTTGCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTCATCTCA 13168 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | |||| || || || || |||||||| ||||| || || ||| | |||||| Sbjct 13169 CACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACCTGCTTGAGCGT 13228 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||||| | ||||| || |||||||| || ||||||||| ||| Sbjct 13229 TTCAGCGGCGAGGTTCAGGTTCCGGAGGCTCGTTGCTTCTATGGATTTCAGATCATGATG 13288 Query 116873 GAGAACGTGCACTCGGAAA 116891 ||||| | ||||| |||| Sbjct 13289 GAGAATATTCACTCTGAAA 13307 Score = 141 bits (156), Expect = 1e-28 Identities = 232/329 (71%), Gaps = 4/329 (1%) Strand=Plus/Plus Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||||| | ||||| ||||||| ||||| || || |||||| ||||||| || || Sbjct 13501 CTTCGCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTT 13560 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147 ||| | || || ||||||||||| || || || ||||||||||| || ||| ||||| Sbjct 13561 TGCCTCGATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGA 13620 Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTT 117207 || |||||| | || |||||| |||| |||||||| ||| || || | |||| | Sbjct 13621 ACTTATCTCCCGTGATGAGGGTTTGCACACAGACTTTGCATGTCTGTTGCACTCGCATCT 13680 Query 117208 GGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGA 117267 ||| ||| | ||| | || ||| ||| |||||||||| || | |||||| Sbjct 13681 TAAGCACCGAGCCAGCAAGCAAATTATCCAGGATATCATCACCGACGCTGTTGGCATCGA 13740 Query 117268 GCAGCGCTTCCTCACCGAAGCGCTGCCG-GTGCGTCTGCTGGGACTCAATTGCGAAAC-G 117325 ||| || || ||||| || |||||| |||| ||| || || | || || | || Sbjct 13741 GCAAGAGTTTCTGACCGAGGCTCTGCCGTGTGC-TCTCCTAGGCATGAA-CGCCACACTA 13798 Query 117326 ATGTCGCAATACATCGAGTTCGTCGCCGA 117354 ||| |||||| || || || |||||||| Sbjct 13799 ATGAAGCAATATATTGAATTTGTCGCCGA 13827 >seq13 Length=187677 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| |||||||| |||| ||||| | | Sbjct 67435 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCT 67494 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || |||| ||||| ||||| |||||| | |||||| Sbjct 67495 GATACCATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATCCCCCCTGACCAG 67554 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| || || ||||| || |||| ||||| || ||||||||| Sbjct 67555 CAGCGTCTGATCTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACTCTTTCTGACTACAAC 67614 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 67615 ATCCAGAAGGAGTCAACCCTTCACCTCGT 67643 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || || || || |||||| | || |||||| | | Sbjct 68192 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTTCT 68251 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| || |||| || || ||||| ||||| | |||||| Sbjct 68252 GATACCATCGACAATGTCAAATCCAAGATTCAGGATAAGGAGGGAATCCCTCCCGACCAG 68311 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||||| || | || || || |||||||| |||| ||||| || | |||||||||| Sbjct 68312 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACACTGAGCGACTACAAC 68371 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||| ||| ||||||| ||| Sbjct 68372 ATCCAGAAGGAAAGCACTTTGCATCTCGTG 68401 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || || || ||||||||| | || ||||| || |||||| | | | | |||| Sbjct 67760 ACTGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAATCG 67819 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| || || || || || || | || ||||| ||| | |||| ||| || || Sbjct 67820 AAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAGCAGCGATTGATCTTCGCTGGTAAG 67879 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||| || | || |||||| ||||||||| ||||||||||| |||| || || Sbjct 67880 CAGCTGGAAGATGGTCGTACCCTCTCCGACTACAATATCCAGAAGGAATCCACTCTTCAC 67939 Query 40894 CTAGT 40898 || || Sbjct 67940 CTCGT 67944 >seq54 Length=115083 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || | |||| | Sbjct 30884 TTCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGATC 30825 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| ||||| | ||||| |||||||| ||| | |||||||| ||| | Sbjct 30824 GACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATTG 30765 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || |||| || ||||| |||||||||||| |||||| Sbjct 30764 ATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAAG 30705 Query 40879 G 40879 | Sbjct 30704 G 30704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515205714137440