Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq13 116 3e-21 seq104 114 1e-20 seq54 113 4e-20 >seq13 Length=187677 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | |||||||| || ||||| ||||| ||| || ||| || ||||||| Sbjct 68172 ACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCCTCG 68113 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| ||||||| |||||||| || || || ||||| ||||||||| | Sbjct 68112 AGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGA 68053 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| || |||| ||||| || | || | || ||| Sbjct 68052 ATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACTTCCAATGTAATAGTCTTG 67993 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| || || || |||||||| Sbjct 67992 CCAGTCAAAGTCTTGACGAAGATCTGCAT 67964 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| || | |||||| ||||| ||||| |||||| Sbjct 67631 GTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCAAGCTGCTTTCCA 67572 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| ||||||||||| || || || || ||||||||||| ||| || || Sbjct 67571 GCGAAGATCAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGAATCTTCGACTTG 67512 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || | ||||||||||| || | || |||||||| || || Sbjct 67511 ACATTGTCAATGGTATCAGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTC 67452 Query 118722 TTTACAAAAATCTGCATG 118739 || || || || |||||| Sbjct 67451 TTGACGAAGATTTGCATG 67434 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || || ||||| ||| | || || ||| || ||||| || ||| Sbjct 67932 GTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGACCATCTTCCAGCTGCTTACCA 67873 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | ||||||||||| ||||| || || ||||| || ||| || ||| Sbjct 67872 GCGAAGATCAATCGCTGCTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCGATTTG 67813 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | | ||||||||| | ||| | || || || |||| ||| Sbjct 67812 ACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCAGTCAAAGTC 67753 Query 118722 TTTACAA 118728 || |||| Sbjct 67752 TTGACAA 67746 >seq104 Length=76965 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || ||| || || |||||||| ||||||| || || ||| Sbjct 66887 CAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGGCCATC 66828 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || ||||| |||| || || ||||| || || || |||||||||||||| Sbjct 66827 CTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTC 66768 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| | ||| ||||| | ||| | || Sbjct 66767 CTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATTGT 66708 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| || ||||||||||| Sbjct 66707 CTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 66675 >seq54 Length=115083 Score = 113 bits (124), Expect = 4e-20 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || ||||||||||| ||| || || || ||||| ||||| || |||||| |||| Sbjct 30706 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 30765 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| || || || ||||||||||||||| ||||| || || | ||| Sbjct 30766 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 30825 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| | ||||||||| | ||| | || ||||| |||||||| || || ||| Sbjct 30826 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAAA 30885 Query 118731 ATCTGCATGGCTTATT 118746 ||| |||| |||| Sbjct 30886 --CTGGATGGTGTATT 30899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433819328377048