Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq315 114 3e-20 >seq315 Length=31375 Score = 114 bits (126), Expect = 3e-20 Identities = 426/663 (64%), Gaps = 11/663 (2%) Strand=Plus/Minus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 || ||| ||| |||| ||||| || ||| || | || | | ||||| ||||| || Sbjct 26010 CTTGACTCCGCCATTGTCTACGACAGAGACTTCAACTATCAATACTTTGGCTTCAAGACT 25951 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 ||||||| ||| ||||| |||||| | | |||||||| || || || ||||||||| Sbjct 25950 CTGGAGAGATCATATCTTCTCAAACTCAACGGCAAGATTGTCGAGCGGCCCCAGCACATG 25891 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961 | ||||| || || ||||| ||| || |||| ||| |||| | ||||| ||| Sbjct 25890 ATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATTGAGCGCGTTTTGGAGACCTAC 25831 Query 248962 ACCGGAATGAGT-GAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 | ||| | | ||| | || || ||| |||| || ||||||||||| ||||| Sbjct 25830 CACCTCATGTCCAGCAAGCTTT-TCACCCACGCCTCACCTACACTCTTCAACGCTGGTAC 25772 Query 249021 CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGG 249080 | | | ||||||| || || || || | | |||| | |||||| | ||||| Sbjct 25771 CCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTCGACATGAAGGACGACAGCATTGACGG 25712 Query 249081 CATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCGCGGGCGGAATCGG 249137 || || ||||| || | |||| || | ||| || || | || || |||||||| Sbjct 25711 TATCTACGACACTCTCA---AGACCTGTGCCATGATCTCCAAGATGGCTGGTGGAATCGG 25655 Query 249138 TCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAG 249197 | |||| | |||||| || | || || ||||| || || || || Sbjct 25654 CTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCACCAACGGTACATC 25595 Query 249198 TGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGC 249257 | || ||| | ||| | || || ||| | ||| ||||| | | | |||||| Sbjct 25594 CAACGGCATCATTCCCATGCTCCGCGTCTTCAACAACACTGCCAGATACGTTGACCAGGG 25535 Query 249258 CGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATT 249314 ||| | ||| || | || ||||| || | || |||||||| || | || Sbjct 25534 CGGTAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTTGGCACGCAGACGTGTT 25475 Query 249315 GGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTT 249374 || || || || ||| ||||||| |||| || || | | || || |||||||| Sbjct 25474 CGACTTTCTTGATTTGCGAAAGAACCACGGTAAGGAAGAAAACCGTGCTCGCGACCTCTT 25415 Query 249375 CTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGAC 249434 | | |||||| || | || | |||||| |||||| | |||| |||||||| Sbjct 25414 CCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAAAGAACGGGGATTGGAC 25355 Query 249435 GCT 249437 || Sbjct 25354 CCT 25352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073737591518592