Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq315 343 1e-89 seq13 96.9 3e-15 seq54 91.5 1e-13 >seq315 Length=31375 Score = 343 bits (380), Expect = 1e-89 Identities = 604/875 (69%), Gaps = 6/875 (1%) Strand=Plus/Plus Query 23102 ATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTAC 23161 || || |||| || |||||||||| |||| ||||| | ||||||||| ||||| | Sbjct 25133 ATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAG 25192 Query 23162 GGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACA 23221 || ||||||| ||| ||| ||||||| ||||| ||| | |||| || ||| | Sbjct 25193 GGGTTGCCCGTTTCGGTCTGGGACTCGAGGATCGAGTACCAGAGCTTCTGGGCACGAATA 25252 Query 23222 CGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACC 23280 ||| || | | ||| || ||| ||||||| ||| | || |||||||| | || Sbjct 25253 -GTCTTGCGGCCACGGCCCTCACGCTCATACTTTTCGTAGAGAGCCTCAAATTCCTCGCC 25311 Query 23281 GTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT 23340 || || || |||||||| || | | | ||||||||||| |||| || || Sbjct 25312 ATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTT 25371 Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||| ||||| |||| || ||||| || ||||| ||||| ||| || ||||| || || Sbjct 25372 TTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACG 25431 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 || || || ||| ||||||| |||||| | |||||| |||||||| || ||||| Sbjct 25432 GTTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCA 25491 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 ||||||||||| | |||||| || || |||| ||| || |||||||| || ||||| | Sbjct 25492 AGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCT 25551 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 ||| ||||||||| | || | ||||| || | || |||||||| | ||| ||| Sbjct 25552 GGCAGTGTTGTTGAAGACGCGGAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCC 25611 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | || || | || || | | ||| |||| || || || || || || Sbjct 25612 GGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCAT 25671 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || || ||||| || || || |||||||||||||| || || |||||||| || || Sbjct 25672 CTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTT 25731 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | |||| | |||||| ||||||| || || ||| ||| | || ||| ||||| Sbjct 25732 CATGTCGACTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGT 25791 Query 23761 CGGGCTGGCGTGCGT--AAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCA 23818 || |||||| || |||| | | | ||||| || | ||| || || | || Sbjct 25792 AGGTGAGGCGTGGGTGAAAAGCTTGC--TGGACATGAGGTGGTAGGTCTCCAAAACGCGC 25849 Query 23819 TCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCG 23878 ||||||| ||||| ||||||| || |||||||| ||||||| || || | |||| Sbjct 25850 TCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGGGGCCGCTCG 25909 Query 23879 ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAG 23938 || | |||||| | ||||| |||||||| | | || || || || ||||| || Sbjct 25910 ACAATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTAT 25969 Query 23939 TCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 | |||||| ||||| | |||| || ||||| || Sbjct 25970 TGATAGTTGAAGTCTCTGTCGTAGACAATGGCGGA 26004 Score = 168 bits (186), Expect = 6e-37 Identities = 362/533 (68%), Gaps = 15/533 (3%) Strand=Plus/Plus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| | || |||||||||||||| ||||||| |||||| | ||| || || || Sbjct 24176 GTGCGCAAGTAGTACATGCCCGTCTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAG 24235 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || | | || | ||||| || |||| |||||| ||| |||||| Sbjct 24236 GTGATCTTGCCCATAGTAGGATCCTTCATGTGAACGTTGAGCGACTGGGACTGGTCGATA 24295 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCA-ATGTACGCATCGACATTTCCCATACGGT 22323 || || || |||||||||||||| | || | ||| |||| || || ||||| || || Sbjct 24296 AAGGCACCGCGATCGGCGGCCATCTGGATAACATG-ACGCTGAGAAATCTCCCAAACAGT 24354 Query 22324 CTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG--ATCCTCTGGACGGACCCGTTA 22381 ||| || || | |||| || || || ||| | || |||| | ||| || || Sbjct 24355 CTTATAGAGAGCCTTGATGTCGGCGGGGAT--ATTGGGGATGTTCTGAATGGAACCATTC 24412 Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441 | | ||||| || || || | ||| ||| | ||| ||| || | ||| ||| Sbjct 24413 TCGGCAATGATGCGGTTCTTCATGGCATCAGACCAGAGACCCATGTCGACGAGATCCTTG 24472 Query 22442 ACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTG 22501 | || |||| || || || || || || | |||||| ||||| |||||||||||| Sbjct 24473 AGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTG 24532 Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || || || | |||||||| ||||| || || | |||||| ||||| ||| Sbjct 24533 GACGTGTATGGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTCGAGGCGGTGGGC 24592 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACT-CTTGAGC 22618 || || || | ||| | |||||| | | ||||||| |||| | | || ||| || Sbjct 24593 ATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTCCTTGA---TCTGCTCCTTCAGA 24649 Query 22619 ATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTG 22671 | ||| ||||| | || || ||| | ||||| |||||| ||| |||| Sbjct 24650 TTGTCCCACTCCCATAACTCAGAAGGCTTGACATT---CCACATGTCGAATTG 24699 >seq13 Length=187677 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| |||| || || || |||||| | || || ||| | || Sbjct 68192 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTTCT 68251 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | |||||| | || ||| ||||| || | || ||||||||| Sbjct 68252 GATACCATCGACAATGTCAAATCCAAGATTCAGGATAAGGAGGGAATCCCTCCCGACCAG 68311 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || || || || ||| |||||||| || ||||||| || ||| Sbjct 68312 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACACTGAGCGACTACAAC 68371 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || ||| ||| | ||||| || ||| | ||| | || ||| Sbjct 68372 ATCCAGAAGGAAAGCACTTTGCATCTCGTGCTTCGTCTGCGTGGTGGT 68419 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 31181 ATTGAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGAC 31240 || ||| || ||||||||| ||||| ||||| || || ||||| || ||||| |||| Sbjct 67423 ATCGAAGTAATCATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAG 67482 Query 31241 GTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTG 31300 || || |||| || | | || | ||||| || || ||||||||| || | Sbjct 67483 GTCGAGTCGTCTGATACCATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATC 67542 Query 31301 CCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATG 31360 || || |||||||||||||| || |||||||| || ||| | || ||| ||| | Sbjct 67543 CCCCCTGACCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACTCTT 67602 Query 31361 AGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || ||||| || || || || || ||||| || || ||| Sbjct 67603 TCTGACTACAACATCCAGAAGGAGTCAACCCTTCACCTCGTTCTT 67647 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| ||||| || || || | || || ||| | || Sbjct 67964 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTCGAATCTTCG 68023 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || |||||||||||| | || || |||||| Sbjct 68024 GATACGATCGATAATGTAAAGTCTAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 68083 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || ||||| || ||| | || || ||| || ||| || || Sbjct 68084 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 68143 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || ||||| ||| |||| || | ||| |||| |||| Sbjct 68144 ATTCAGAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTGCGGGGTGGTA 68192 >seq54 Length=115083 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 |||||| ||||||||||| ||||| || |||||| | || || || | || |||| | Sbjct 30885 TTTCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGAT 30826 Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320 ||| | ||||| | ||| |||||||| ||| | || || ||||||||||| | Sbjct 30825 CGACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATT 30766 Query 31321 AATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || ||||||||||| ||| | || ||| | || || ||| || |||||||| || Sbjct 30765 GATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAA 30706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445754732064480