Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq521 116 7e-21 seq315 100 6e-16 >seq521 Length=16305 Score = 116 bits (128), Expect = 7e-21 Identities = 295/444 (66%), Gaps = 10/444 (2%) Strand=Plus/Plus Query 101916 TTGTTGCCTTT-GCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTC 101974 ||| || |||| ||||| || || || |||||||| || ||||| || || || |||||| Sbjct 13514 TTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGATTTTC 13573 Query 101975 TGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGG 102034 ||| ||||||| | ||| | |||| || ||||||| ||| || || | || || | Sbjct 13574 TGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCTCCCGT 13633 Query 102035 GACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC 102094 || || ||| | || ||||||||||| |||||| | | | | | ||| Sbjct 13634 GATGAGGGTTTGCACACAGACTTTGCATG---TCTGTTGCACTCGCATCT--TAAGCACC 13688 Query 102095 ---CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 ||| |||| ||| || | || || |||| || || || | || || ||||| Sbjct 13689 GAGCCAGCAAG-CAAATTATCCAGGATATCATCACCGACGCTGTTGGCATCGAGCAAGAG 13747 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 ||||| || | | ||||| | | | || |||||| || | |||| || Sbjct 13748 TTTCTGACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACACTAATGAAGCAA 13807 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271 || ||||||||||| || ||| |||||||||| | || |||||| || || Sbjct 13808 TATATTGAATTTGTCGCCGATCGCCTATTGGTTGCTCTTGGTAACGAAAAGGTATACAAA 13867 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 ||||||||||| |||||||| || |||||| | | |||||| ||||| || Sbjct 13868 ACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGTAAGACAAACTTCTTC 13927 Query 102332 GAAAAGAGAGTCGCCGAGTATCAA 102355 || ||| |||| | || |||||| Sbjct 13928 GAGAAGCGAGTTGGAGAATATCAA 13951 >seq315 Length=31375 Score = 100 bits (110), Expect = 6e-16 Identities = 416/650 (64%), Gaps = 10/650 (2%) Strand=Plus/Plus Query 94398 GCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAG 94457 ||| ||| |||||| || ||||| | |||| ||| || ||||||| | || | || Sbjct 25267 GCCCTCACGCTCATACTTTTCGTAGAGAGCCTCAAATTCCTCGCCATAGCAATCAGCCAG 25326 Query 94458 GCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTT--CACTCTCTCC 94515 |||||||||||||| ||| ||||| |||| ||||| | || | || || | || | Sbjct 25327 GCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCC--CCGTTCTTTTCGACGCGCTTC 25384 Query 94516 ATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTA 94575 ||||||||||| | | ||| | ||| |||| || || | | | ||||| ||| Sbjct 25385 ATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTA 25444 Query 94576 CCGGCATTCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATCAGAAATATAG 94635 ||| ||||||| | |||| |||||| |||||| |||||| | ||| Sbjct 25445 CCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAG 25504 Query 94636 ATGGCTGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACGTTA 94695 ||||| || || | ||||| || |||||| ||| | | | ||| | ||| Sbjct 25505 ATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGTTG 25564 Query 94696 AAGATTTGGAGGAACGCCATGAGACCAGGGTGG--GTACCACTCCATGAC-GAAATGGGG 94752 |||| |||| | | |||| || | ||| ||||| | || | | |||| Sbjct 25565 AAGACGCGGAGCATGGGAATGATGCC--GTTGGATGTACC-GTTGGTGCCGGCAATGTAA 25621 Query 94753 CTTCCTTTTGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATG 94812 || | || | | || | || | ||||| ||| ||||| |||||||||| Sbjct 25622 GAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATC 25681 Query 94813 ATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGA 94872 || || ||| ||||| || || ||||| |||||||| || || | | | | | Sbjct 25682 ATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACT 25741 Query 94873 AGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCA 94932 ||||| || || || || || | | || ||| || || ||||| || || || Sbjct 25742 AGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCG 25801 Query 94933 TGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGAT 94992 ||||| ||| | || |||||||| | || || || | || | |||| | Sbjct 25802 TGGGTGAAAAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATGTTGTCT 25861 Query 94993 CCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 || ||| ||||| || || ||||||||||||| ||| || ||||| || Sbjct 25862 CCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGGGGCCGCTCGAC 25911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989557450079770