Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq315 159 5e-34 >seq315 Length=31375 Score = 159 bits (176), Expect = 5e-34 Identities = 990/1566 (63%), Gaps = 50/1566 (3%) Strand=Plus/Plus Query 79051 GGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAT 79110 || || || || || ||||| |||| ||| || | || |||||| || || ||| Sbjct 24482 GGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTAT 24541 Query 79111 GGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCC 79170 || || | | ||||| || |||| |||||| | || || || || ||||| || || Sbjct 24542 GGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTCGAGGCGGTGGGCATGGGAGCG 24601 Query 79171 ACCAATAAACTATTTCTAAGACCGTATGATC--TGATTTTATCTTTTAGAGATTCCCAAT 79228 | || || || | || ||||| | || |||| | || || ||| ||||| | Sbjct 24602 AGCAGCAACGAGTTGCGAATACCGT--GCTCCTTGATCTGCTCCTTCAGATTGTCCCACT 24659 Query 79229 CCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAG-CG 79287 |||| | ||||| || |||||||| | || |||| |||||||| || | || || Sbjct 24660 CCCATAACTCAGAAGGCTTGACATTCCACATGTCGAATTGAAGAATACC-TTCCGAGGCG 24718 Query 79288 TATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCT 79347 || || || | || || || |||| || || ||| | ||| | || Sbjct 24719 GGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTC 24778 Query 79348 AATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTA 79407 | ||| ||| || ||||| ||||| |||| ||| ||||| || | || || | Sbjct 24779 AGTGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGAC 24838 Query 79408 TCAAATGGATAATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 79466 || || || | |||| || ||| ||||| || | || |||||||||| |||||| Sbjct 24839 TCGAAGGGC-ATGCGCAGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGAT 24897 Query 79467 AGGTCTATGTCTCTTATTAGAAATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTA 79525 |||| ||||| | | || | || | ||| || ||| || |||| || | ||| | Sbjct 24898 GGGTCGATGTCGCATGTT-GCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAA 24956 Query 79526 TAATTTTATTGAGATTCCTGACTATTACTT---TGACCACATCCTTTAGTTTGAGAAAAT 79582 | || || ||||| || | ||| | |||| ||||| || | || || |||| | Sbjct 24957 TGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACC---TCGTGGAGCTTCTGAAAGT 25013 Query 79583 CAAATCGTCCATCTATT------ACAAA--CATGTTCAACGCGACAGATGCCAGATTACA 79634 | | || || ||| | || || || | || || | ||| |||| || || Sbjct 25014 CGTAGCGGCCTTCTTTGTAGTCGACGAAGGCAGG--CAGGGCAAGAGAGGCCAAGTTGCA 25071 Query 79635 AACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTT 79694 ||| || ||||||| || | || | || || || ||||| ||||| | Sbjct 25072 AACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCG 25131 Query 79695 AATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 79754 ||||||||| | || | || || |||||| |||| || |||||||| || || || || Sbjct 25132 AATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAA 25191 Query 79755 CGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT 79814 || | || ||||| |||| || || | |||| | ||||| | || | | | Sbjct 25192 GGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATCGAGTACCAGA-GCTTCTGGGCACGA- 25249 Query 79815 TATAGACTTGTATCTCTTT---TCTCTTTCGTATTGT--GTATATAATCGTTCGAACTCG 79869 |||| |||| | || | || || | | ||| | | | || || || Sbjct 25250 -ATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTTTCGTAGAGAGCC--TCAAATTCC 25306 Query 79870 TCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCA 79929 || || | ||| | | ||||| || |||| |||||||| | | ||| || || Sbjct 25307 TCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCG 25366 Query 79930 TCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 79987 | || ||| || || ||||| |||||||| || ||||| ||||| | || || || | Sbjct 25367 T--TCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGC 25424 Query 79988 TGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 80047 | | | || || || || |||||| | ||| || || | | | || | Sbjct 25425 GAGCACGGTTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTG 25484 Query 80048 AATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTA 80107 ||||| || || | ||| ||||| | | || ||||| ||||| || ||||| || | Sbjct 25485 CGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAA 25544 Query 80108 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCAT 80167 |||||| || ||||| || | || | | ||| ||||| || || ||||||||||| | Sbjct 25545 CGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAATGATGCCGTTGGATGTACCGT 25604 Query 80168 TGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCC 80225 |||| |||| || || || | ||||| || | || | || || ||||| Sbjct 25605 TGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCA-AG-CCGATTCC 25662 Query 80226 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCT 80285 || ||||| || ||||| | || || || | || || ||||| || || ||||| Sbjct 25663 ACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCT 25722 Query 80286 ATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC---GACTAGTTCCCGC 80342 || || |||||| | ||| |||||| ||||| | |||| | || || || Sbjct 25723 GTCGTCCTTCATGTCGACTAGGAAACAGGAAGACA---GCTGACATTGGGGGGTACCAGC 25779 Query 80343 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTC 80402 || || | ||||| || ||||| || || || |||| || | ||| ||||| Sbjct 25780 GTTGAAGAGTGTAGGTGAGGCGTGGGTGAAAAGCTTGCTGGACATGAGGTGGTAGGTCTC 25839 Query 80403 AATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTG 80462 | | | || || | | ||| || ||||| || ||||| | ||||||||| Sbjct 25840 CAAAACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTG 25899 Query 80463 AGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAA 80522 || | || || |||||| || | ||| | | || ||| | |||| ||| || || Sbjct 25900 GGGCCGCTCGACAATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAA 25959 Query 80523 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582 ||||| || | || ||||||| ||||| | ||| | |||| || | ||||| Sbjct 25960 GCCAAAGTATTGATAGTTGAAGTCTCTGTCGTAGACAATGGCGGAGTCAAGCTCCTCCTT 26019 Query 80583 ATATTT 80588 | ||| Sbjct 26020 GTGTTT 26025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718249999314160