Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq521 89.7 7e-13 >seq521 Length=16305 Score = 89.7 bits (98), Expect = 7e-13 Identities = 197/293 (67%), Gaps = 3/293 (1%) Strand=Plus/Minus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 ||||| | || |||| |||| ||| || |||| || ||||| || || || Sbjct 13341 TCTTTGATGTAGCTATCAATCAGGAGAGAGTATGTTTCAGAGTGAATATTCTCCATCATG 13282 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA 42445 ||||||||||| ||||| || | ||||| | |||||| || || | || || ||| Sbjct 13281 ATCTGAAATCCATAGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCA 13222 Query 42446 GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 42505 | ||||| || || || |||||| || ||||| || ||||| | ||| || Sbjct 13221 AGCAGGTTTTCATTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAGATG 13162 Query 42506 AAATATTTTTCGTC--CGGTGTTA-ATTTATTCCAATCATTGATATCTTTAGATATATCT 42562 || ||||| ||||| || | | || |||||||| | | || || || | ||| Sbjct 13161 AAGTATTTCTCGTCGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCCTTGGACAGATCG 13102 Query 42563 ACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGAT 42615 | || || ||||||| || || ||||| ||||| || ||||| | |||||| Sbjct 13101 ATCTCCTCGGCCGTCCAGAAAGAGGCTTCGGCCTTCTTGTACATTTGCCAGAT 13049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671121632931440