Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq521 150 3e-31 seq315 132 7e-26 seq11 95.1 2e-14 >seq521 Length=16305 Score = 150 bits (166), Expect = 3e-31 Identities = 210/289 (73%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| | ||||| || ||||||| ||| ||| |||||||| Sbjct 13049 ATCTGGCAAATGTACAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAGGAGATCGATCTG 13108 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||| || |||||||| | | ||| ||| || ||| | | || || || Sbjct 13109 TCCAAGGACTTGCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTCATCTCA 13168 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG-TTGACACG 125197 ||||||||||| |||||||| | || || || || ||||| || || ||| |||| || Sbjct 13169 CACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACCTGCTTGA-GCG 13227 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 ||| ||| | |||| |||| ||| ||||| || ||||| || ||||||| Sbjct 13228 TTTCAGCGGCGAGGTTCAGGTTCCGGAGG-CTCGTTGCTTCTATGGATTTCAGATCATGA 13286 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 | ||||| | ||||| |||| |||||| |||||||| | ||||| Sbjct 13287 TGGAGAATATTCACTCTGAAACATACTCTCTCCTGATTGATAGCTACAT 13335 Score = 118 bits (130), Expect = 2e-21 Identities = 334/504 (66%), Gaps = 27/504 (5%) Strand=Plus/Plus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCG---TAC 125417 || || ||||| || | |||| ||||| ||||| | | |||||| ||| | | Sbjct 13448 ATCCGAAAAAAAGCAGACTGGGCCATTCGTTGGAT---TCAGGACAAGGATTCCAGCTTC 13504 Query 125418 GCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCG 125477 ||| | | ||||||| ||||| || || |||||||||||||| ||| ||||| Sbjct 13505 GCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCC 13564 Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 | || || |||||||||||||| || || |||||||| || || | |||||| || Sbjct 13565 TCGATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGAACTT 13624 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTG 125597 || || || || ||||| | ||| ||||||| ||| ||||| | ||| | Sbjct 13625 ATCTCCCGTGATGAGGGTTTGCACACAGACTTTG-CAT--GTCTGTTGC---ACT---CG 13675 Query 125598 CGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGG 125657 | || || | || ||||| | ||| || | || | ||||| || || | Sbjct 13676 CATCTTAAGCACCGAGCCAGCAAGCAAATTATCCAGGATATCATCACCGACGCTGTTGGC 13735 Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGCAA 125716 || || ||||||||||| ||||| | || || || || | | ||||||||| || Sbjct 13736 ATCGAGCAAGAGTTTCTGACCGAGGCTCTGCC-GTGTGCTCTCCTAGGCATGAACGCCAC 13794 Query 125717 GCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGG- 125773 |||||| | || || || ||||| || ||||| ||| || |||| |||| Sbjct 13795 ACTAATGAAGCAATATATTGAATTTGTCGCCGATCGCCTATTG-----GTTGCTCTTGGT 13849 Query 125774 --CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAG 125831 | ||| | ||||| || || ||||| ||||||||| | ||| || | | Sbjct 13850 AACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGT 13909 Query 125832 GGTAAGACCAACTTTTTCGAGAAG 125855 |||||||| ||||| ||||||||| Sbjct 13910 GGTAAGACAAACTTCTTCGAGAAG 13933 >seq315 Length=31375 Score = 132 bits (146), Expect = 7e-26 Identities = 309/459 (67%), Gaps = 8/459 (2%) Strand=Plus/Minus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 |||||||| |||||||| || || || || || || | ||| ||||| | || |||| Sbjct 25550 GATACGTTGACCAGGGCGGTAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTT 25491 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||||| ||||| || |||||| | || |||| || ||| || ||||| | Sbjct 25490 GGCACGCAGACGTGTTCGACTTTCTTGATTTGCGAAAGAACCACGGTAAGGAAGAAAACC 25431 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--AA 97042 | || | ||| | || ||| || ||| | |||||| | ||||||||||||||| || Sbjct 25430 GTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAA 25371 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 || | || | |||| ||| ||||| ||| || || || || ||| | ||||||| Sbjct 25370 AGAACGGGG--ATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTA 25313 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGAC 97161 ||||| || |||||||| ||| || |||| |||||||| || |||| Sbjct 25312 TGGCGAGGAATTTGAGGCTCTCTACGAAAAGTATGAGCGTGAGGGCCGTGGCCGCAAGAC 25253 Query 97162 GAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | ||| ||| | |||| || ||| | | ||| | | | ||| || || || | Sbjct 25252 TATTCG-TGC-CCAGAAGCTCTGGTACTCGATCCTCGAGTCCCAGACCGAAACGGGCAAC 25195 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | || || ||||||||| || || | || |||||||| || |||| ||| Sbjct 25194 CCCTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAACCTGGGAACC 25135 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 || ||||||| ||||||||||| || | |||||| Sbjct 25134 ATTCGCAGCTCCAACCTGTGCACGGAGATCATTGAGTAC 25096 >seq11 Length=195197 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 126681 ATCAATGTAGTCTACGATGCGTTCAATGTCACACTCTTTGACACCACGGGTCGTCACCGC 126740 ||||||||| | ||| ||| |||| ||||| ||| || ||||||| |||||| || Sbjct 38206 ATCAATGTACTTGGCGACGCGCTCAAAGTCACTCTCGCCGAAACCACGGCTCGTCATGGC 38265 Query 126741 AGGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTT 126800 || ||||||| | |||||||| || | | |||||||||||| ||||| | | ||| Sbjct 38266 TGGTGTACCGATACGGATGCCGCAGGGGGTCAAAGCGCTCTTGTCACCGGGGATAGAGTT 38325 Query 126801 TTTGTTGCAAGCGAT 126815 ||||||||||| || Sbjct 38326 CTTGTTGCAAGCAAT 38340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741039802775440