Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq13 134 3e-26 >seq13 Length=187677 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||||||||| ||||| || | ||||| || || || || || || ||| Sbjct 68160 GTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCCTCGAGCTGCTTACCA 68101 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || ||||| || || ||||| || || |||||||| | ||| Sbjct 68100 GCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTAGACTTT 68041 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||| || ||| || || | |||||||||||| ||||| | || Sbjct 68040 ACATTATCGATCGTATCCGAAGATTCGACTTCCAATGTAATAGTCTTGCCAGTCAAAGTC 67981 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 67980 TTGACGAAGATCTGCAT 67964 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| || || | || ||||| ||||| ||||| ||||| || || || | ||| ||| Sbjct 67947 AGTACGAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGACCATCT 67888 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || | | ||| ||||||||||| || ||||| |||||| Sbjct 67887 TCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGAATACCTTCCTTATCC 67828 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| | ||| ||||| || | ||| ||| | || ||||| || || || ||| Sbjct 67827 TGAATCTTCGATTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTC 67768 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | || || |||| | | ||||| Sbjct 67767 TTTCCAGTCAAAGTCTTGACAACTGT-TGCAT 67737 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| || || ||| ||||| || || ||||| || || | ||||| Sbjct 68404 AAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGTGTGCGGCCGTC 68345 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || ||||| |||||||| || | || || || ||||| ||||| || ||||| Sbjct 68344 TTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATTCCCTCCTTATC 68285 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| | ||| ||||| || | |||||| || ||| || || | || ||||| Sbjct 68284 CTGAATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCGACTTCCAAGGTGATAGT 68225 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| | || || ||||| || ||||| Sbjct 68224 CTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 68192 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||| || || || | || || || ||||| || || |||||| Sbjct 67664 ATGCCACCTCGAAGGCGAAGAACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCA 67605 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||||| || || || |||||||| || || || | ||| || ||||| Sbjct 67604 GAAAGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCAGGG 67545 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || ||||||||||| | || ||||| || | |||||| | || Sbjct 67544 GGGATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATGGTATCAGACGACTCG 67485 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || || || || || || || ||||| Sbjct 67484 ACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 67435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151367508700552