Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq35 91.5 1e-13 >seq35 Length=137478 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 5581 GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCC 5640 |||||| ||||| || || | || ||||||| ||| | ||| || ||| | | | | Sbjct 85152 GCGCTCAATGATCAATTGAGCCACTCTGTCGCCCTCCTTGATCTCAAAGTCGGTCTCGGC 85093 Query 5641 GAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCC 5700 |||||| |||| || || | ||||||||| |||||||| || || |||||||| Sbjct 85092 ATGGTTGAAAAGCAGGACCTTGACTTGGCCGCGGTAATCGGCGTCAATGACTCCCGCGCC 85033 Query 5701 CACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGT 5753 |||||||| || ||| || || || ||||||||||| | |||||||| Sbjct 85032 GGTATCGATGAAATGTTTGCTTGCGAGACCAGAGCGGGGAGCAATGCGGCCGT 84980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430043424742928