Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq142 161 2e-35 seq206 143 4e-30 >seq142 Length=61967 Score = 161 bits (178), Expect = 2e-35 Identities = 198/268 (74%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || |||||||| || || |||||||| ||||| Sbjct 53218 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATTACCAAGCCTGCTAT 53276 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||||||||| ||||||||| | || | || |||| ||||||| Sbjct 53277 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCCGCCATGATCTACGAAGAGAC 53336 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || ||| | |||| |||||| || || |||| |||||| || ||| || || Sbjct 53337 CCGCACTGTCCTCAAGACGTTCCTCGAGGGTGTCATCCGTGATGCCGTCACCTACACTGA 53396 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || || || | || | ||||| || |||| || || || Sbjct 53397 GCACGCCAAGCGCAAGACCGTTACTTCTCTCGACGTTGTCTACGCTCTGAAGCGCCAGGG 53456 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 53457 CCGCACCCTGTACGGTTTCGGTGGTTAA 53484 >seq206 Length=49320 Score = 143 bits (158), Expect = 4e-30 Identities = 192/262 (73%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| ||| |||| |||||| || ||||| || || ||||| ||||| || || Sbjct 33608 GCTAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACTAAGCCCGCCAT 33550 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| ||||| ||||| || ||||||||| | || | || | || ||||||| Sbjct 33549 TCGCCGTCTCGCTCGCCGTGGCGGTGTCAAGCGTATATCCGCCATGATTTACGAAGAGAC 33490 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCG 16610 ||| ||| || |||| ||||| | || |||| ||||||| || || || || | Sbjct 33489 TCGCACTGTCTTAAAGACTTTCCTTGAAGGTGTCATCCGTGATGCTGTTACA-TACACAG 33431 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| ||||| ||||| ||||| || | || |||| || || | || || |||| Sbjct 33430 AACACGCCAAACGAAAGACCGTCACGTCTCTCGACGTCGTGTACGCGCTAAAGCGACAAG 33371 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||||| | ||||| || || Sbjct 33370 GCCGTACCCTATATGGGTTCGG 33349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073285441142