Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq521 86.0 8e-12 >seq521 Length=16305 Score = 86.0 bits (94), Expect = 8e-12 Identities = 195/293 (67%), Gaps = 3/293 (1%) Strand=Plus/Minus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 ||||| | || |||| |||| ||| || |||| || ||||| || || || Sbjct 13341 TCTTTGATGTAGCTATCAATCAGGAGAGAGTATGTTTCAGAGTGAATATTCTCCATCATG 13282 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 ||||||||||| ||||| || | |||||| | || ||| || || | || || || Sbjct 13281 ATCTGAAATCCATAGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCA 13222 Query 33685 GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33744 || |||||||| || || |||||| || ||||| || ||||| | ||| || Sbjct 13221 AGCAGGTTTTCATTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAGATG 13162 Query 33745 AAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTTTAGATATATCT 33801 || ||||| ||||| | | | || |||||||| | | || || || | ||| Sbjct 13161 AAGTATTTCTCGTCGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCCTTGGACAGATCG 13102 Query 33802 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854 | || || | ||||| || || || || ||||| || ||||| | |||||| Sbjct 13101 ATCTCCTCGGCCGTCCAGAAAGAGGCTTCGGCCTTCTTGTACATTTGCCAGAT 13049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622930894357040