Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq315 365 1e-95 >seq315 Length=31375 Score = 365 bits (404), Expect = 1e-95 Identities = 1076/1634 (66%), Gaps = 42/1634 (3%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || ||| | | ||| ||||| || | | ||| ||||||| Sbjct 25809 TTCACCCACGCCTCACCTACACTCTTCAACGCTGGTACCCCCCAATGTCAGCTGTCTTCC 25750 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || | | ||||||||||| ||| || ||||||| ||||| || |||| Sbjct 25749 TGTTTCCTAGTCGACATGAAGGACGACAGCATTGACGGTATCTACGACACTCTCAAGACC 25690 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | || ||||||| || || ||||| || | | || ||||| | ||||| Sbjct 25689 TGTGCCATGATCTCCAAGATGGCTGGTGGAATCGGCTTGAACG-TCCACCGCATCCGTGC 25631 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTT 363783 || | | ||||||| |||||| || ||| || || || | |||||||||| Sbjct 25630 TACCGG-CTCTTACATTGCCGGCACCAACGG-TACATCCAACGGCATCATTCCCATGCTC 25573 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 || || || |||| ||||| || ||||| |||||||| || ||||| || || Sbjct 25572 CGCGTCTTCAACAACACTGCCAGATACGTTGACCAGGGCGGTAACAAGCGACCTGGTGCA 25513 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 ||||| || || ||||||||| || || || | || || |||||||| | || || Sbjct 25512 TTTGCCATCTACCTCGAGCCTTGGCACGCAGACGTGTTCGACTTTCTTGATTTGCGAAAG 25453 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 ||| || || || ||| ||||| || || || ||| ||| || ||| | | || Sbjct 25452 AACCACGGTAAGGAAGAAAACCGTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGAT 25393 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAAT 364021 | || ||||||||||| || | | | | ||||| | ||| | || || |||| | Sbjct 25392 CTCTTCATGAAGCGCGTCGAA--AAGAACGGGGATTGGACCCTCATGTGTCCCAACGAGT 25335 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAAT 364081 | || || || | ||| | || || || | || ||||| |||||||||||||| Sbjct 25334 GCCCTGGCCTGGCTGATTGCTATGGCGAGGAATTTGAGGCTCTCTACGAAAAGTATGAGC 25275 Query 364082 CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 ||||| | || ||||| |||| || |||||||| |||| | ||| | || | Sbjct 25274 GTGAGGGCCGTGGCCGCAAGACTATTCGTGCCCAGAAGCTCTGGTACTCGATCCTCGAGT 25215 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | |||| || || || | |||| |||| ||||||| ||| | |||||| | ||| || Sbjct 25214 CCCAGACCGAAACGGGCAACCCCTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCA 25155 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATAC 364260 ||||| || |||| || || |||| |||| |||||| || || ||||| ||||| ||| Sbjct 25154 ACCAGAAGAACCTGGGAACCATTC-GCAGCTCCAACCTGTGCACGGAGATCATTGAGTAC 25096 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT- 364319 || || || ||| ||| || || ||| | || || | || || || || || || Sbjct 25095 TGTGCCCCTGATGAGGTTGCTGTTTGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGTC 25036 Query 364320 -----AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCA--TGCTA 364372 ||||| || | ||| ||| | || | || || || ||| || | Sbjct 25035 GACTACAAAGAAGGCCGCTACGACTTTCAGAAGCTCCACGAGGTCAC---TCAAGTGGTC 24979 Query 364373 CT-TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG---- 364426 | | || ||| ||||| | || || || |||| || ||| || || || Sbjct 24978 GTCCGTAACCTCAACAAGATCATTGATGTCAACCATTACCCCATTGAGGAGGCTCGCAAC 24919 Query 364427 AGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTT 364486 ||| || ||||| ||||| || || ||| ||||||| ||||| || ||||||| || Sbjct 24918 AGC-----AACATGCGACATCGACCCATCGGTGTTGGTGTTCAGGGTCTTGCTGACGCTT 24864 Query 364487 TTATGATGCTC--AAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGAT 364544 || | ||||| ||| | || || || || || || |||| || || ||| |||| Sbjct 24863 TTCT--TGCTCTGCGCATGCCCTTCGAGTCTCCCGAGGCCCGTGAGCTCAACAAGCAGAT 24806 Query 364545 CTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGG-CAAAAACCAAGG 364603 ||| || || || || || ||| |||| || || ||| ||| |||| | ||| | Sbjct 24805 CTTCGAGACCATCTACCACGCTGCACTGACAGCCTCTCTTGAGCTGGCCAAAGAGCAA-G 24747 Query 364604 GAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTAT 364663 | |||||||| | |||| || || ||| | || | | || || || | | Sbjct 24746 GCCCCTACTCTACCTTCAAGGGCTCTCCCGCCTCGGAAGGTATTCTTCAATTCGACATGT 24687 Query 364664 GGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAG 364722 ||||||||| ||| |||| |||| | ||||| | || | | | | | ||| || Sbjct 24686 GGAATGTCAAGCCTTCTGAGTTATGGGAGTGGGACAATCTGAAGGAGC-AGATCAAGGAG 24628 Query 364723 CATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATC 364782 || |||| ||||||||| | | || ||||||||||| || || || | || || Sbjct 24627 CACGGTATTCGCAACTCGTTGCTGCTCGCTCCCATGCCCACCGCCTCGACCTCGCAAATT 24568 Query 364783 CTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTT 364842 || || ||||| |||||||| || || | || ||| |||| ||||| || | Sbjct 24567 CTGGGTAACAATGAGTGCTTTGAGCCATACACGTCCAACATTTACCAGCGCCGTGTCTTG 24508 Query 364843 TCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTG 364902 | || ||||| | ||| || || | || |||||||||| |||| || || Sbjct 24507 GCTGGTGAATTCCAGGTCGTCAACCCCTGGCTCCTCAAGGATCTCGTCGACATGGGTCTC 24448 Query 364903 TGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCA 364962 ||| ||| |||||||||| ||||| |||| |||||||| | |||||||| || Sbjct 24447 TGGTCTGATGCCATGAAGAACCGCATCATTGCCGAGAATGGTTCCATTCAGAACATCCCC 24388 Query 364963 GGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACT 365022 | || | || | ||| || | || || || || ||||| ||||| ||| | Sbjct 24387 AATATCCCCGCCGACATCAAGGCTCTCTATAAGACTGTTTGGGAGATTTCTCAGCGTCAT 24328 Query 365023 CTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTA 365082 | || | ||||| |||||||||||||| |||||| ||| ||||||| | ||||| Sbjct 24327 GTTATCCAGATGGCCGCCGATCGCGGTGCCTTTATCGACCAGTCCCAGTCGCTCAACGTT 24268 Query 365083 TTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCC 365142 ||||| | || || | |||| | || || ||||| || || ||||| | Sbjct 24267 CACATGAAGGATCCTACTATGGGCAAGATCACCTCTATGCACTTTGCTGGCTGGAAGTTG 24208 Query 365143 GGTCTTAAGACAGG 365156 ||||| ||||| || Sbjct 24207 GGTCTCAAGACGGG 24194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303318631837508