Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq315 127 3e-24 >seq315 Length=31375 Score = 127 bits (140), Expect = 3e-24 Identities = 794/1261 (63%), Gaps = 38/1261 (3%) Strand=Plus/Plus Query 62482 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATC 62541 |||| ||| || ||||| |||||||||| ||| || || || | || || | || Sbjct 24781 TGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTC 24840 Query 62542 AAATGGATAATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAG 62600 || || | |||| || ||| ||||| || | || |||||||||| |||||| | Sbjct 24841 GAAGGGC-ATGCGCAGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGATGG 24899 Query 62601 GTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAA 62660 ||| ||||| | | || | | ||| || ||| || |||| || | ||| || | Sbjct 24900 GTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGA 24959 Query 62661 TTTTATTGAGATTTCTGACAATTACTT---TGACCACATCCTTCAGTTTGAGAAAATCAA 62717 | || ||||| || | ||| | |||| ||||| || | || || |||| || Sbjct 24960 TCTTGTTGAGGTTACGGACGACCACTTGAGTGACC---TCGTGGAGCTTCTGAAAGTCGT 25016 Query 62718 ATCGCCCATCTATT------ACAAA--CATGTTCAATGCAACAGATGCCAGATTACAAAC 62769 | || || ||| | || || || | || |||| ||| |||| || ||||| Sbjct 25017 AGCGGCCTTCTTTGTAGTCGACGAAGGCAGG--CAGGGCAAGAGAGGCCAAGTTGCAAAC 25074 Query 62770 GGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 62829 || ||||||| || | || | || ||||| ||||| || || | || Sbjct 25075 AGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAAT 25134 Query 62830 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 62889 |||||| | || | || || |||||| |||| || |||||||| || || || || || Sbjct 25135 GGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGG 25194 Query 62890 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTAT 62949 | || ||||| |||| || || | |||| | ||||| | || | | | || Sbjct 25195 GTTGCCCGTTTCGGTCTGGGACTCGAGGATCGAGTACCAGA-GCTTCTGGGCACGA--AT 25251 Query 62950 AGATTTGTATCT-CTTTTCTCTTTCGTATAGT----GTATACAATCGTTCGAACTCGTCT 63004 || ||| | | ||| | ||| | ||| | | | || || || || Sbjct 25252 AGTCTTGCGGCCACGGCCCTCACGCTCATACTTTTCGTAGAGAGCC--TCAAATTCCTCG 25309 Query 63005 CCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 63064 || | || |||| ||||| || || | |||||||| | | ||| || |||| Sbjct 25310 CCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTC 25369 Query 63065 TCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 63124 | | || || ||||| |||||||| || ||||| ||||| | || || || | | Sbjct 25370 TTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCA 25429 Query 63125 CTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGC 63184 | | ||| || || || |||||| | ||| || || | | | || | ||| Sbjct 25430 CGGTTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGC 25489 Query 63185 CACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTAT 63244 || || || | ||| ||||| | | ||||| || ||||| || ||||| || | |||| Sbjct 25490 CAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTAT 25549 Query 63245 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTC 63304 || || ||||| || | || | | ||| ||||| || || ||||||||||| ||||| Sbjct 25550 CTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTG 25609 Query 63305 CCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTG 63362 || | || || || | ||||| || | || | || || ||||| || | Sbjct 25610 CCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCA-AG-CCGATTCCACCAG 25667 Query 63363 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 63422 |||| || ||||| | || || || | || || ||||| || || || || || | Sbjct 25668 CCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGT 25727 Query 63423 CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAA 63479 || |||||| | ||| |||||| ||||| | |||| | || || || || | Sbjct 25728 CCTTCATGTCGACTAGGAAACAGGAAGACA---GCTGACATTGGGGGGTACCAGCGTTGA 25784 Query 63480 ATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63539 | | ||||| || ||||| || || || || | || | ||| ||||| | | Sbjct 25785 AGAGTGTAGGTGAGGCGTGGGTGAAAAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAA 25844 Query 63540 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63599 | || || | | ||| || || || || ||||| | ||||||||| || | Sbjct 25845 CGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGGGGCC 25904 Query 63600 TTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63659 || || |||||| ||| | ||| | | || ||| | |||| ||| || || |||| Sbjct 25905 GCTCGACAATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAA 25964 Query 63660 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATT 63719 | || | || ||||||| ||||| | ||| | |||| || | ||||| | || Sbjct 25965 AGTATTGATAGTTGAAGTCTCTGTCGTAGACAATGGCGGAGTCAAGCTCCTCCTTGTGTT 26024 Query 63720 T 63720 | Sbjct 26025 T 26025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633615414682400