Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15]
2,094 sequences; 34,423,103 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq13 107 2e-18
>seq13
Length=187677
Score = 107 bits (118), Expect = 2e-18
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||||||||| || || | || ||| | ||||| || || ||
Sbjct 67964 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTCGAATCTTCG 68023
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || ||||| | ||| | || | ||| ||||| ||||| ||||| ||||||||
Sbjct 68024 GATACGATCGATAATGTAAAGTCTAAGATTCAA-GACAAGGAAGGCATTCCCCCTGACCA 68082
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || ||||| || || || | || |||| || ||| || ||| |||||
Sbjct 68083 GCAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAA 68142
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||| || || || || || ||||| || ||
Sbjct 68143 TATTCAGAAGGAGTCTACTCTGCATTTGGTCCT 68175
Score = 100 bits (110), Expect = 2e-16
Identities = 153/215 (71%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| ||||| || || | ||||| | ||||| || || |||
Sbjct 68192 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTTCT 68251
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || ||||| || || || | || | ||| || || || || || || || |||
Sbjct 68252 GATACCATCGA--CAATGTCAAATCCAAGATTCAG-GATAAGGAGGGAATCCCTCCCGAC 68308
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| || || ||||||||||||| || || | ||||| | ||||| || |||| |||
Sbjct 68309 CAGCAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACACTGAGCGACTAC 68368
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || ||| ||| | ||| | |||||
Sbjct 68369 AACATCCAGAAGGAAAGCACTTTGCATCTCGTGCT 68403
Score = 98.7 bits (108), Expect = 9e-16
Identities = 148/206 (72%), Gaps = 7/206 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||| | |||| ||||||||||| || || ||||||| | || || ||||| ||
Sbjct 67737 ATGCAAC-AGTTGTCAAGACTTTGACTGGAAAGACCATCACCCTTGAGGTCGAGTCCTCC 67795
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| ||||| || || || | || | ||| || || ||||| ||||| |||||
Sbjct 67796 GACACCATCGA--CAATGTCAAATCGAAGATTCA-GGATAAGGAAGGTATTCCTCCTGAT 67852
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | || || || || || || | ||||||| ||| || | ||| |||
Sbjct 67853 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGTACCCTCTCCGACTAC 67912
Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201
||||| || || |||||||| || ||
Sbjct 67913 AATATCCAGAAGGAATCCACTCTTCA 67938
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433316941198610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |