Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq13 107 2e-18 >seq13 Length=187677 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | || ||| | ||||| || || || Sbjct 67964 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTCGAATCTTCG 68023 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | ||| | || | ||| ||||| ||||| ||||| |||||||| Sbjct 68024 GATACGATCGATAATGTAAAGTCTAAGATTCAA-GACAAGGAAGGCATTCCCCCTGACCA 68082 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| || || || | || |||| || ||| || ||| ||||| Sbjct 68083 GCAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAA 68142 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || || || || || ||||| || || Sbjct 68143 TATTCAGAAGGAGTCTACTCTGCATTTGGTCCT 68175 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || | ||||| | ||||| || || ||| Sbjct 68192 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTTCT 68251 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| || || || | || | ||| || || || || || || || ||| Sbjct 68252 GATACCATCGA--CAATGTCAAATCCAAGATTCAG-GATAAGGAGGGAATCCCTCCCGAC 68308 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || ||||||||||||| || || | ||||| | ||||| || |||| ||| Sbjct 68309 CAGCAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACACTGAGCGACTAC 68368 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||| ||| | ||| | ||||| Sbjct 68369 AACATCCAGAAGGAAAGCACTTTGCATCTCGTGCT 68403 Score = 98.7 bits (108), Expect = 9e-16 Identities = 148/206 (72%), Gaps = 7/206 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||| | |||| ||||||||||| || || ||||||| | || || ||||| || Sbjct 67737 ATGCAAC-AGTTGTCAAGACTTTGACTGGAAAGACCATCACCCTTGAGGTCGAGTCCTCC 67795 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || || | || | ||| || || ||||| ||||| ||||| Sbjct 67796 GACACCATCGA--CAATGTCAAATCGAAGATTCA-GGATAAGGAAGGTATTCCTCCTGAT 67852 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || || || || || | ||||||| ||| || | ||| ||| Sbjct 67853 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGTACCCTCTCCGACTAC 67912 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 ||||| || || |||||||| || || Sbjct 67913 AATATCCAGAAGGAATCCACTCTTCA 67938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433316941198610