Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq521 105 7e-18 >seq521 Length=16305 Score = 105 bits (116), Expect = 7e-18 Identities = 196/287 (68%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| |||| || | ||||| || ||||||| || | ||||||||| || || Sbjct 13335 ATGTAGCTATCAATCAGGAGAGAGTATGTTTCAGAGTGAATATTCTCCATCATGATCTGA 13276 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||| ||||| || | ||| |||| | ||| || || || | ||| | || Sbjct 13275 AATCCATAGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCAAGCAGG 13216 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||||||||| || || || || || ||||| || ||||| || || || || | | Sbjct 13215 TTTTCATTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAGATGAAGTAT 13156 Query 93542 TTCTCATCATCTTT---AAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 ||||| || || | | | || | ||||||| | || || || ||||||| || Sbjct 13155 TTCTCGTCGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCCTTGGACAGATCGATCTCC 13096 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 ||| | ||||| || || ||||| || || |||||||| | ||| || Sbjct 13095 TCGGCCGTCCAGAAAGAGGCTTCGGCCTTCTTGTACATTTGCCAGAT 13049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556846224168560