Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq104 123 2e-23 seq13 118 9e-22 seq54 91.5 1e-13 >seq104 Length=76965 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || ||||| | || || || || |||| ||||| ||||| | Sbjct 66672 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCT 66731 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| || |||| || || || ||||||||||| ||||| || || Sbjct 66732 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 66791 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||||| ||||| ||||| || || ||| | |||||| ||| ||| | ||| ||| Sbjct 66792 CAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACCCTGAGCGACTAC 66851 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || |||| | || || || |||| |||| || ||| Sbjct 66852 AACATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGCCTGCGTGGTGGT 66902 >seq13 Length=187677 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || || || || || || |||| | ||||| ||| | | Sbjct 68192 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTTCT 68251 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || ||||| || ||||| || |||||||| || || ||||| || Sbjct 68252 GATACCATCGACAATGTCAAATCCAAGATTCAGGATAAGGAGGGAATCCCTCCCGACCAG 68311 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| ||||| |||||||| || ||| | || || |||||| | ||| |||||| Sbjct 68312 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACACTGAGCGACTACAAC 68371 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||| ||| | ||| | || | || |||| || ||| Sbjct 68372 ATCCAGAAGGAAAGCACTTTGCATCTCGTGCTTCGTCTGCGTGGTGGT 68419 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 |||| |||||||| || || || || | ||||| || || ||||||| || || || Sbjct 67429 GTAATCATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAG 67488 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | |||||| | ||| || |||| || ||||| ||||||||||| || || || Sbjct 67489 TCGTCTGATACCATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATCCCCCCT 67548 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || ||||| || || || || || ||| | ||||| |||||| | || || Sbjct 67549 GACCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACTCTTTCTGAC 67608 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || || || || ||| Sbjct 67609 TACAACATCCAGAAGGAGTCAACC 67632 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| || || || || | || | ||||| ||| | | Sbjct 67964 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTCGAATCTTCG 68023 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || |||||||||||||| || ||||| || || || Sbjct 68024 GATACGATCGATAATGTAAAGTCTAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 68083 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| || || ||| | |||||| ||| || | ||||| ||||| Sbjct 68084 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 68143 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || | ||||| || |||| |||| || ||| Sbjct 68144 ATTCAGAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTGCGGGGTGGT 68191 >seq54 Length=115083 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || ||| | || || || || |||| ||||| || || || | || || | Sbjct 30885 TTTCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGAT 30826 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| ||||| |||||||||||||| ||||| || || || || || | Sbjct 30825 CGACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATT 30766 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || || ||||| ||| | ||||| || ||| | ||||| ||||||||||| || Sbjct 30765 GATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAA 30706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419717288279110