Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq121 152 1e-31 seq56 84.2 4e-11 >seq121 Length=70861 Score = 152 bits (168), Expect = 1e-31 Identities = 442/673 (66%), Gaps = 13/673 (2%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || ||||| |||||||||||||||||||| ||| | |||| ||||| || Sbjct 55479 GTCGGCTCGCTGTCTGGTGGTTGGAAGATGAAGCTCGCCTTGGCTCGTGCCATGCTTAGA 55538 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| || || || || || || || ||||| || | ||| | ||||| | ||| Sbjct 55539 AAAGCCGACGTGCTTCTCCTCGACGAACCTACCAATCATCTCGACGTCGCCAACATCGCC 55598 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| | | || || | | |||||||| ||||||||| Sbjct 55599 TGGCTGGAGAACTACCTCAAGACTCACCCAAACATCACCAGTCTCATTGTTTCTCACGAC 55658 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935 || || ||||| || || | | | |||| ||||| |||| || |||||| Sbjct 55659 TCCGGGTTCCTGGACAATGTCACCACGGACATCTACCACTACGAGCCCAACAAGAAGCTG 55718 Query 279936 TCCAAGC-ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTA 279994 | | || ||| ||||||||| |||| || |||| || || || ||| |||| Sbjct 55719 GC-ATGCTACAAGGGCAACCTGGCTGCCTTTGTGGAGGTCCGTCCCGAAGCGAAGTCCTA 55777 Query 279995 CTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGG 280054 ||| |||| | | ||| || | ||| | |||||| || || |||| ||| Sbjct 55778 CTACACCCTGTCTGCCTCCAACGTCCAGTTCAAGTTCCCTCCTCCGGGAATTCTCACGGG 55837 Query 280055 CATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTATCCC 280112 | ||| ||| || || || ||||| ||| | | ||| || | | || ||| Sbjct 55838 CGTCAAGTCACAGACGCGAGCCATCATTCGAA--TGAGCAACGTGTCATACACGTACCCC 55895 Query 280113 AATGGCCCCAACATCTTCAGCAGT-----GTCAACTCGCAGGTTTCTATGAACTCACGGA 280167 || |||||||| | || || || ||| || ||| | ||| || || || Sbjct 55896 AA-GGCCCCAAAGCCGTC-GCTGTCCGAAGTCTCCTGTCAGCTGTCTCTGTCTTCCCGTG 55953 Query 280168 TTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCG 280227 | | ||||||| ||||| |||||||| ||||| ||||| ||||| | || || || | Sbjct 55954 TGGCCATCATTGGGCCCAACGGTGCGGGCAAGTCCACCCTCATCAAGTTGCTCACCGGTG 56013 Query 280228 AGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCG 280287 | | | |||| || || ||||||||||||| |||| || | |||| || Sbjct 56014 AAAGCATCCCCACCACAGGCAAAGTCGAGAAGCATCCCAACCTGCGCATCGGTTACATCA 56073 Query 280288 CTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTC 280347 ||||||||| | | ||| | |||| ||||| || | ||| || ||||| ||| | | Sbjct 56074 AGCAGCACGCTCTGGAGCACGTGGAGATGCACCTTGAGAAGACCCCGAACCAGTACCTCC 56133 Query 280348 AGTGGCGCTATGC 280360 ||||||| ||||| Sbjct 56134 AGTGGCGATATGC 56146 >seq56 Length=112071 Score = 84.2 bits (92), Expect = 4e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 ||||| ||||| | ||||| || ||||| ||| ||||| ||| | | || || Sbjct 62248 CACTCCCGCATGAGAGGTCTGTCAGGAGGTCAGCGTGTCAAGACGGTCCTTGCTGCTTGC 62307 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || ||||| | ||||||| |||||||||| |||||||||||||||||||| ||||| || Sbjct 62308 TCA-TGGCAGCGCCCTCACTTGATCGTTCTTGACGAGCCTACCAACTATCTTGACCGTGA 62366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027809223781054