Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq104 167 4e-36 seq13 152 9e-32 seq54 120 6e-22 seq121 114 2e-20 seq315 95.1 2e-14 >seq104 Length=76965 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || ||| ||| || |||||||| || ||| Sbjct 66901 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 66842 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || |||| ||| ||||| || ||| Sbjct 66841 AGGGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGA 66782 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 66781 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 66722 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || ||||||||||| |||||||| |||||||| Sbjct 66721 TCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 66675 >seq13 Length=187677 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| ||||| || || || ||||| || || || || || ||||| Sbjct 68190 CCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 68131 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| || || || ||||||| || ||||| || ||| Sbjct 68130 AAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 68071 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||||||||| | ||| || ||||| || || | ||||| ||| Sbjct 68070 ATGCCTTCCTTGTCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACT 68011 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || || || || | ||||||||||| |||||||| Sbjct 68010 TCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 67964 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 68271 TCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAAT 68330 || || |||||||| || ||| ||||| | || ||||| | |||||| ||||| || Sbjct 68382 TCCTTCTGGATGTTGTAGTCGCTCAGTGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAA 68323 Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 || |||| ||| |||||||| || || || ||||| || |||||||| | ||||| Sbjct 68322 ATAAGTCGTTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGAATCTTGGATTTGACATTG 68263 Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450 |||||||| || | ||||| |||||||||||||| || ||||| || | ||||||||| Sbjct 68262 TCGATGGTATCAGAAGATTCGACTTCCAAGGTGATAGTCTTTCCAGTCAAGGTCTTGACA 68203 Query 68451 AATATCTGCAT 68461 || || ||||| Sbjct 68202 AAAATTTGCAT 68192 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || || ||||| || |||||||| || || || Sbjct 67661 CCACCTCGAAGGCGAAGAACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAA 67602 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || ||||| || || Sbjct 67601 AGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCAGGGGGG 67542 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | |||||| || ||||| || | || || || Sbjct 67541 ATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATGGTATCAGACGACTCGACC 67482 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||||| || || ||||||||||||||||| || ||||| || Sbjct 67481 TCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATGAT 67432 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | ||| | ||| || ||||| || || ||||| || || |||||| Sbjct 67962 CCACCACGGAGGCGGAGTACGAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAG 67903 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || | || || || || || ||| Sbjct 67902 AGGGTACGACCATCTTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGA 67843 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || |||||||| | ||||| ||||||||||| | || || || Sbjct 67842 ATACCTTCCTTATCCTGAATCTTCGATTTGACATTGTCGATGGTGTCGGAGGACTCGACC 67783 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 || | ||||||||| ||||| || | |||||||| Sbjct 67782 TCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTGAC 67748 >seq54 Length=115083 Score = 120 bits (132), Expect = 6e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || || ||||| || ||||| || || | || || || | |||||| || ||||| || Sbjct 30706 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 30765 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || ||||| || |||||||| ||||||||||| || || | |||||| ||| Sbjct 30766 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 30825 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | || || || || | ||||||||| || ||||| || ||||||||||| Sbjct 30826 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 30884 >seq121 Length=70861 Score = 114 bits (126), Expect = 2e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 224974 GGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTG 225033 |||||| |||||||||| ||||||||| |||||| | || ||||| |||| | || | Sbjct 56147 GGCATATCGCCACTGGAGGTACTGGTTCGGGGTCTTCTCAAGGTGCATCTCCACGTGCTC 56088 Query 225034 GAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG 225093 | ||| ||||| | ||| | ||||||| ||||||||||||| || | || | Sbjct 56087 CAGAGCGTGCTGCTTGATGTAACCGATGCGCAGGTTGGGATGCTTCTCGACTTTG-CCTG 56029 Query 225094 AGTCGGTTGTGC-CTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGG 225152 | || ||| || |||||||| | ||||||||| || | |||||||||||| |||| Sbjct 56028 TGGTGGGGATGCTTTCACCGGTGAGCAACTTGATGAGGGTGGACTTGCCCGCACCGTTGG 55969 Query 225153 GGCCAATCACGCCAATCCGGGATGACA 225179 | ||||| | | | | ||||| |||| Sbjct 55968 GCCCAATGATGGCCACACGGGAAGACA 55942 >seq315 Length=31375 Score = 95.1 bits (104), Expect = 2e-14 Identities = 179/261 (69%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 31350 GACGCGGGAGACCCCTCAAAGGTAGGATGGGGACCGTGCTCTTCCGCGAGTTCGCAAGAG 31409 || |||||||| |||| ||||||| | ||| || ||||||| || || || |||| Sbjct 24713 GAGGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAG 24772 Query 31410 GCCTCCACCGCTGCAAAGTAAATATTCTCAAAGATTTCCCGGTTGAGGTTCTTGGCCGCG 31469 || || || || ||| || |||| ||||| | | |||||| | |||| || Sbjct 24773 GCTGTCAGTGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCG 24832 Query 31470 TCAGAGTCAAAAGGCATGCGCAGCTTGAAGAACA-CGTCCTGAAGACCCTGGACACCCAC 31528 ||| || || ||||||||||| ||||| | |||| ||||||||| ||||| || Sbjct 24833 GGAGACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAAC 24891 Query 31529 TCCAATTGGGCGCCGGCGCATGTTACTAGTCTTCGCCTCGGGAATTGCGTAGGACATGAC 31588 || || || || | |||||||| || | ||||| ||| | ||| |||| Sbjct 24892 ACCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGAC 24951 Query 31589 GTCAATGCTCTTGTCGAGGTT 31609 |||||| |||||| |||||| Sbjct 24952 ATCAATGATCTTGTTGAGGTT 24972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921598276533680