Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq13 122 7e-23 seq104 102 7e-17 seq54 84.2 2e-11 >seq13 Length=187677 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || || ||||| | ||||| || || ||||| ||||| ||| Sbjct 68193 ATACCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCG 68134 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || ||| || || || |||||||| ||||||| ||||| ||||| || Sbjct 68133 GACAAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGG 68074 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| |||| | || | || || | |||||| Sbjct 68073 GGAATGCCTTCCTTGTCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCG 68014 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| |||| ||| || || || |||||||| Sbjct 68013 ACTTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 67964 >seq104 Length=76965 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||| ||||||| ||||| ||| || || || |||||||| || Sbjct 66865 TCCTTCTGGATGTTGTAGTCGCTCAGGGTACGGCCATCCTCGAGCTGCTTACCAGCAAAG 66806 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || || || || |||||||| |||||||| || ||||| ||||| || | | Sbjct 66805 ATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 66746 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||||| || || || || | ||| | || || || || || ||||| || Sbjct 66745 TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGACG 66686 Query 114372 AAAATCTGCAT 114382 ||||||||||| Sbjct 66685 AAAATCTGCAT 66675 >seq54 Length=115083 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/190 (70%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254 || ||||||||||| ||| || || ||| || ||||| || || |||||| |||| Sbjct 30706 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 30765 Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314 | ||||| ||||| || |||||||| || ||||| || || || | | || Sbjct 30766 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 30825 Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 | ||||| | ||| ||||| || | ||| | || ||||| |||||||| || || ||| Sbjct 30826 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAAA 30885 Query 114375 ATCTGCATGG 114384 ||| |||| Sbjct 30886 --CTGGATGG 30893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420123677907528