Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq315 288 2e-72 seq521 150 3e-31 >seq315 Length=31375 Score = 288 bits (318), Expect = 2e-72 Identities = 1102/1710 (64%), Gaps = 53/1710 (3%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||||| |||||| | || |||| || | || |||||||||||| |||||| Sbjct 24143 ACGGTGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTG 24202 Query 243797 AGTCC--ACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTG 243854 || || ||| |||| | | |||||| | || | ||| ||| || | | Sbjct 24203 AGACCCAACTT--CCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCAT----AG--TAG 24254 Query 243855 GGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCT 243914 | || | | | ||| | ||||| |||||| |||||||| |||| | || | Sbjct 24255 GATCCTTCATGT---GAACG---TTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGAT 24308 Query 243915 CTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCT 243974 | |||||||| ||| | | |||||| ||||| | | ||||| |||| | || Sbjct 24309 CGGCGGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTATAGAGAGCCT 24368 Query 243975 TGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGG 244034 ||| || |||||| ||||||||| | || || || | | | |||| || Sbjct 24369 TGATGTCGGCGGGGATATTGGGGATGTTCTGAATGGAACCATTCTCGGCAATGATGCGGT 24428 Query 244035 TGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTG---T 244091 | |||| ||| ||| || |||| | | || ||| || || ||| | | Sbjct 24429 TCTTCATGGCATCAGACCAGAGACCCATGTCGACGAGATCCTTGA---GGAGCCAGGGGT 24485 Query 244092 TCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCT 244151 | || ||||| || || || | || || ||||||||||| | |||| || |||| Sbjct 24486 TGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCT 24545 Query 244152 CGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCA 244211 | | || ||| |||| ||||| || |||| || || || |||||||| | | || Sbjct 24546 CAAAGCACTCATTGTTACCCAGAATTTGCGAGGTCGAGGCGGTGGGCATGGGAGCGAGCA 24605 Query 244212 GCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACA 244271 ||| ||| | | |||||| || ||| | | || | || ||| ||||| | Sbjct 24606 GCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCATA 24665 Query 244272 TGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGA 244331 | || ||| |||| ||||||||| || || || | || | | Sbjct 24666 ACTCAGA-AGGC--------TTGACATTCCACATGTCGAATTGAAGAATACCTTCCGAGG 24716 Query 244332 CGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTG-GGCCAGCTTAC-AGCTCTC 244389 |||| ||||| | |||| | |||||| || | || || |||||||| | || Sbjct 24717 CGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTT-GCTCTTTGGCCAGCTCAAGAGAGGCT 24775 Query 244390 GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCC 244449 ||| || || |||| ||||||||||||||||||| |||||| | || ||||||| | Sbjct 24776 GTC-AGTGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGG 24834 Query 244450 GCAGGTGAAGGGGATGCCCATCATCATGAAGA-CGTCGGCCAGTCCCTGCACGCCGATGC 244508 | |||||| |||| || | || ||| | |||| || || ||||| || || | | Sbjct 24835 AGACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACAC 24893 Query 244509 CGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGT 244568 ||||||||| |||||| ||||| | || || | ||||||| |||| | | Sbjct 24894 CGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACAT 24953 Query 244569 CGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGT 244628 | || | |||||||||||| ||| || || | ||| ||| ||| |||||||| Sbjct 24954 CAATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGAAAGT 25013 Query 244629 CGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGG 244688 |||| || | || | || || || || | ||||| | || Sbjct 25014 CGTAGC----GGCCTTCT------TTGTAGTCG--ACGAAGGCAGGCAGGGCAAGAGAGG 25061 Query 244689 CCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGT 244748 ||| |||||| || || ||||| || | | ||||| | ||||| ||||| |||| Sbjct 25062 CCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGT 25121 Query 244749 TACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGT 244808 | || ||||| ||||||| || || ||| ||| ||||||||| ||||||| Sbjct 25122 TGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGT 25181 Query 244809 AGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCC 244868 | ||||| ||||| || || ||| ||||| |||||| || |||||| | | Sbjct 25182 ACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATCGAGTACCAGAGCTTCT 25241 Query 244869 TAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGA 244928 || | ||| |||| | |||||| ||| || ||| || ||||| | Sbjct 25242 GGGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTTTCGTAGAGAGCCTCAA 25301 Query 244929 ACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCCAC 244987 | || ||| || || | ||||| |||||| || ||| |||||||| |||| Sbjct 25302 ATTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACT-CGTTGGGACACATGAGGGTCCAA 25360 Query 244988 TCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGG 245047 || ||| | | ||| | || ||||||||| || |||||||| || || |||||||| Sbjct 25361 TCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGG 25420 Query 245048 TCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACG 245107 || | | | | || ||| || |||||| | || || | |||||| || ||| Sbjct 25421 TCGCGAGCACGGTTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACG 25480 Query 245108 TCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGG 245167 || ||||||| ||||| | ||||| || | || || || |||||||| || |||||| Sbjct 25481 TCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGG 25540 Query 245168 TCCACCATCCTCTCGAGCGC-GTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTG 245226 || || || | || | |||||||| ||| || | || | |||||||| || Sbjct 25541 TCAACGTATCTGGC-AGTGTTGTTGAAGACGCGGAGCATGGGAATGATGCCGTTGGATGT 25599 Query 245227 GCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAG 245286 ||||||||||| ||||| | ||| | | | || | | || | || ||| | Sbjct 25600 ACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGAT 25659 Query 245287 TCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCAT 245346 ||| || || ||||||||| | ||| ||| |||||| ||||| || || || || Sbjct 25660 TCCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAAT 25719 Query 245347 GCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGA 245406 |||||| |||||||| || || || ||||| |||||||| | |||| | | | Sbjct 25720 GCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGC 25779 Query 245407 GTTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436 |||||| || || || ||||||||| || Sbjct 25780 GTTGAAGAGTGTAGGTGAGGCGTGGGTGAA 25809 >seq521 Length=16305 Score = 150 bits (166), Expect = 3e-31 Identities = 309/446 (69%), Gaps = 15/446 (3%) Strand=Plus/Plus Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 |||| | || | |||| || || | || || ||||||||||||||| || ||||| Sbjct 13502 TTCGCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTT 13561 Query 42753 GCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 ||||| || |||||||||||| || ||| | ||||||||| ||||||||||| ||||| Sbjct 13562 GCCTCGATTTTCTGGCTCAAGAAGCGTGGTCT-GATGCCCGGCCTCACCTTCTCTAACGA 13620 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 ||| ||| | | || ||||| |||| | |||||||| || || || |||| || Sbjct 13621 ACTTATCTCCCGTGATGAGGGTTTGCACACAGACTTTGCATGTCTGTTGCACTCG---CA 13677 Query 42872 CCTCAGGCA-CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930 || | ||| | |||| | ||| | ||| || |||||||| || || || | | Sbjct 13678 TCTTAAGCACCGAGCCAGC-AAGCAAATTATCCAGGATATCATCACCGACGCTGTTGGCA 13736 Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGAC 42989 ||||| | ||||| || || || | ||| |||||| | || | ||||||||| | Sbjct 13737 TCGAGCAAGAGTTTCTGACCGAGGCTCTG-CCGTGTGCTCTCCTAGGCATGAACGCCACA 13795 Query 42990 CTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTG--TGCCAGATGGGTCTC 43046 || ||| |||| || || | | |||||||| | || || ||| | ||| | Sbjct 13796 CTAATGAAGCAA-TATATTGAATTTGTCGCCGATCGCCTATTGGTTGC--TCTTGGTAAC 13852 Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 | ||||| || | ||||||||| || ||||||||||| || |||| || Sbjct 13853 GAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGT 13912 Query 43107 AAGACCAACTTTTTCGAGAAGCGCGT 43132 ||||| ||||| ||||||||||| || Sbjct 13913 AAGACAAACTTCTTCGAGAAGCGAGT 13938 Score = 100 bits (110), Expect = 5e-16 Identities = 178/258 (69%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| | ||| |||||| ||||||||||| || ||| Sbjct 13049 ATCTGGCAAATGTACAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAGGAGATCGATCTG 13108 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAG----AACGAAAAGTTTTTCCTCAA 42415 |||||||| || | | ||| || ||||||| |||| || | ||| || Sbjct 13109 TCCAAGGAC-TTGCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTCATCTC 13167 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 | |||| |||| ||||| || || ||||||||||| |||||||| |||||| | Sbjct 13168 ACACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACCTGCTTGAGCG 13227 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| ||||| || |||||||| || || ||||| || Sbjct 13228 TTTCAGCGGCGAGGTTCAGGTTCCGGAGGCTCGTTGCTTCTATGGATTTCAGATCATGAT 13287 Query 42536 AGAGAACGTGCACTCTGA 42553 ||||| | |||||||| Sbjct 13288 GGAGAATATTCACTCTGA 13305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944314481921440