Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 1e-14 >seq6 Length=213420 Score = 95.1 bits (104), Expect = 1e-14 Identities = 167/241 (69%), Gaps = 8/241 (3%) Strand=Plus/Plus Query 20416 GTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCA 20471 ||||||||||| ||| ||||| | || |||| ||| || || || || | ||| || Sbjct 168970 GTTCCACGCACTCATGATGATCCGCCTGTCGTACGGCTTGTTCTTGATCTTGTCAAT-CA 169028 Query 20472 CAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACG 20531 || | | | ||||| | |||| ||| || ||||| | | || || |||||| Sbjct 169029 CA---TCGGCGAGCTGGTCGACTCCCTTGCCGGTGTAGTCCGTCTTGGCATCGACGTACT 169085 Query 20532 CCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGT 20591 | || |||||||||| ||| ||||| ||||| || ||||||| ||| || | | || Sbjct 169086 CTGCGCCAAAGTGCCGCCATTGGAAGCCGTACACGGGTCCCAGATCGCCTACTTCACGGT 169145 Query 20592 GCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTC 20651 | || || || | | | |||||||| | ||| ||||| ||||||||| ||||| | Sbjct 169146 GTGCGAGACCCAGATTGTCGAGGAACTCGCGGGATCCATTGCCGTCCCATATTTTGACGC 169205 Query 20652 C 20652 | Sbjct 169206 C 169206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441361247066960