Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq13 141 2e-28 seq54 84.2 5e-11 >seq13 Length=187677 Score = 141 bits (156), Expect = 2e-28 Identities = 173/235 (74%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| ||||| |||| || || || ||||| || |||| Sbjct 67665 CATG-CCACCTCGAAGGCGAAGAACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGT 67607 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| ||||| || | || ||||| ||||||||||||||||| || | Sbjct 67606 CAGAAAGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCAG 67547 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||||| || || ||||| || |||| || || || || || | ||| ||| | Sbjct 67546 GGGGGATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATGGTATCAGACGACT 67487 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 | || ||||| ||||| ||||| ||||| || ||||||||||| || ||||| || Sbjct 67486 CGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATGAT 67432 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || ||||| ||||||| | || || || || || | || || || || ||| Sbjct 68154 TCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAG 68095 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || | || || ||||| || || || || || | || || || Sbjct 68094 ATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTAGACTTTACATTA 68035 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||||| ||||| | || || ||||| || |||| |||||||||| Sbjct 68034 TCGATCGTATCCGAAGATTCGACTTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACG 67975 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 67974 AAGATCTGCAT 67964 >seq54 Length=115083 Score = 84.2 bits (92), Expect = 5e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || || || || ||||||| || || || ||||| || | || || || ||||||||| Sbjct 30706 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 30765 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||||| || | || || || || || || |||||||| | || || || || Sbjct 30766 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 30825 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | || || || || || || ||||| ||||| || ||||||||||||||||| Sbjct 30826 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 30884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179622750609732