Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq315 300 2e-76 seq521 109 7e-19 seq311 96.9 4e-15 >seq315 Length=31375 Score = 300 bits (332), Expect = 2e-76 Identities = 1138/1769 (64%), Gaps = 29/1769 (2%) Strand=Plus/Plus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 ||||||| |||||| || |||| | || | ||||||||| ||||||||||| | Sbjct 24147 TGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGAC 24206 Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684 || ||||||| || | ||||| |||| | |||| | || ||| | |||| Sbjct 24207 CCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGT 24266 Query 113685 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCA 113744 | ||| | ||||| || ||||| ||| || ||||| || ||||| | || | Sbjct 24267 GAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCGGCCATCTGGATAA 24326 Query 113745 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 113804 ||| | || ||||| ||||| | ||||| ||| || || | ||||||| Sbjct 24327 CATGACGCTGAGAAATCTCCCAAACAGTCTTATAGAGAGCCTTGATGTCGGCGGGGATAT 24386 Query 113805 CCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACC 113864 ||| || || ||||| ||| | | | ||| | | |||||| | | |||| Sbjct 24387 TGGGGATGTTCTGAATGGAACCATTCTCGGCAATGATGCGGTTCTTCATGGCATCAGACC 24446 Query 113865 AGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCG 113924 ||||||| || | |||||||| | ||| ||||| || || ||||| | Sbjct 24447 AGAGACCCATGTCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAG 24506 Query 113925 CGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCA 113984 | | | || | | | || || |||| |||||||||||||||||||||||||||||||| Sbjct 24507 CCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACCCA 24566 Query 113985 AGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT 114044 ||||| | ||| ||||| ||||||||||| || | || | ||| || | ||| | Sbjct 24567 GAATTTGCGAGGTCGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGT 24626 Query 114045 TTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCG--TAGTTGAGCTTTGTCTCCCCCTG 114102 ||| | || | ||||| || |||||| || || | || | || | | Sbjct 24627 GCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCATAACTCAGAA--GGCTTGACATT 24684 Query 114103 CCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGG 114162 |||||| || || || || ||||||| ||||| || || |||| || || ||| || Sbjct 24685 CCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGAGTAGGG 24744 Query 114163 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG-AGGGCTGCGTGATACATTGTCTCAA 114221 ||| | | | |||| || || | || || || ||||| || || ||||| | Sbjct 24745 GCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAGTGCAGCGTGGTAGATGGTCTCGA 24803 Query 114222 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-AATA 114280 | || | || | | ||||||| || || || | | || || | || | Sbjct 24804 AGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCG-CAGAGCAAGA 24862 Query 114281 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTT 114340 || | || || ||||| || ||||| | || || || ||||||| ||| || || Sbjct 24863 AAAGCGTCAGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTGTTG 24922 Query 114341 CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACA 114400 ||||| ||| | ||| ||| || ||| || | | | || || || | ||| Sbjct 24923 CGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTTACGGACGACC 24982 Query 114401 ACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT-GACATA 114459 || | |||| || || ||||| | | || | | || ||| | | | ||| | Sbjct 24983 ACTTGAGTGACCTCGTGGAGCTTCTGAAAGTCGTAGCGGCCT-TCTTTGTAGTCGACGAA 25041 Query 114460 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 114519 ||| ||||| | || |||| || || |||| |||||| || |||||| Sbjct 25042 GGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTC 25101 Query 114520 TATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 114579 || || ||||| |||| || || || |||||| |||| |||||| || || ||| Sbjct 25102 AATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTT 25161 Query 114580 TGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 114639 | |||| || ||||||||||| ||||| | || | ||||| || || ||||||| ||| Sbjct 25162 TCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAG 25221 Query 114640 AATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGT 114698 || | | ||||| | || | ||| | | ||| | | | || ||||| ||| | Sbjct 25222 GATCGAGTACCAGAGCTTCTG-GGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTCAT 25280 Query 114699 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 114758 ||||| |||||| || ||||| || || || | || | || || || || | Sbjct 25281 ACTTTTCGTAGAGAGCCTCAAATTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGT 25340 Query 114759 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGA 114818 || || | ||| | ||| | || || || || |||||||||||||| ||||||| Sbjct 25341 TGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGA 25400 Query 114819 TCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 114878 |||| ||||| |||||| || ||| || |||||| | || || || |||| Sbjct 25401 TCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTACCGTGGTTCTTTCGCA 25460 Query 114879 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 114938 | || | |||||| | | || |||||||| || || ||||| | || | || || Sbjct 25461 AATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACC-- 25518 Query 114939 TACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCA 114992 | | || ||| |||||| || || || || ||| || || ||||| |||| Sbjct 25519 -AGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGGAGCA 25577 Query 114993 TTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA 115052 | |||||||| || | ||| || || || || ||| ||| | || | || Sbjct 25578 TGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGA 25637 Query 115053 CATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGA 115112 |||| || || || || || || ||| ||| ||||| || || | ||| Sbjct 25638 TGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGA 25697 Query 115113 GACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACA 115172 || || ||||||| ||||| || ||| |||| | ||| ||||| ||| |||| Sbjct 25698 GAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACA 25757 Query 115173 TTTGTGGCCTT--GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC 115230 || | || || ||||||||||||||||| || |||| |||||| ||| | | | Sbjct 25758 --GCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA--AAAGC 25813 Query 115231 TTG--GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCG 115288 ||| |||||| | |||||||||||| ||| ||||| || || ||||||| Sbjct 25814 TTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATGTTGTCTCCCCAAATACCG 25873 Query 115289 ATCGAGACCCGCATAAACATGTATTGGGG 115317 | || || ||||||| ||||| ||||| Sbjct 25874 ACCGCAACGCGCATAATCATGTGCTGGGG 25902 >seq521 Length=16305 Score = 109 bits (120), Expect = 7e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| ||| ||| | |||||| ||||||||||| ||||| || |||||| || || Sbjct 13659 GCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGGCCG 13600 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| ||||| |||||||| | ||||||||||| ||| | ||| ||||||||| Sbjct 13599 GGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGATG 13540 Query 126167 CCCTCCACACACGCGAACGC 126186 ||||||||| ||||| || Sbjct 13539 CCCTCCACAGCAGCGAAAGC 13520 >seq311 Length=31549 Score = 96.9 bits (106), Expect = 4e-15 Identities = 167/237 (70%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 10960 ACCGACGGCGTCAATTTCATCGATGAAAACGATACACGG----TTGATTTTCACGGGCAA 11015 ||| | ||| || | ||| |||||||||| ||| | || ||| ||| |||| Sbjct 7456 ACCAATGGCATCCAGTTCGTCGATGAAAATGATGGAAGGCGACTTGGCTTT----GGCAG 7401 Query 11016 CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG 11075 | ||||| |||||||||| ||||||||| ||||| ||||| ||||| | || || Sbjct 7400 CACTAAAGAGCTCTCGGACTCGCTTGGCACCTACACCGACAAAGATTTCGTCGAA-TTCA 7342 Query 11076 CGGCGGAACAT-TGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGG 11134 | | | |||| | || |||||| ||| | |||||| || | |||||| || || || Sbjct 7341 CTACCGGACATGTAGAAGAAGGGCACGCCAGCTTCACCGGCCACGGCTCGCGCAAGTAGA 7282 Query 11135 GTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGG-ATCCTGGCACC 11190 ||||||||||| || || ||| | ||||| |||| | |||| | | ||||||| Sbjct 7281 GTCTTCCCCGTTCCTGGAGGCCCAACCAGAAGAACACC-CTTGGGCAACTTGGCACC 7226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597337964269520