Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq315 248 9e-61 >seq315 Length=31375 Score = 248 bits (274), Expect = 9e-61 Identities = 1097/1717 (64%), Gaps = 56/1717 (3%) Strand=Plus/Minus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||||| |||||| |||||||||| || || || ||||| | | |||| | || | Sbjct 25968 TACTTTGGCTTCAAGACTCTGGAGAGATCATATCTTCTCAAACTCAACGGCAAGATTGTC 25909 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 ||||| || || || || | |||||||| || |||| ||| || || |||| | Sbjct 25908 GAGCGGCCCCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATTGAG 25849 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACC 93903 |||||| | | | | |||| |||| | ||| ||| | || || Sbjct 25848 CGCGTTTTGGAGACCTACCACCTCATGTCCAGCAAGCTTTTCACCCACGCCTCACCTACA 25789 Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCA----CAGATGTCTTCGTGTTTCCTGAT-GACGA 93958 || |||||||| || ||||| ||| ||| ||||||| |||||||| | ||| | Sbjct 25788 CTCTTCAACGCTGGTACCCC----CCAATGTCAGCTGTCTTCCTGTTTCCTAGTCGAC-A 25734 Query 93959 ACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAA 94018 |||| |||| ||| ||| || | ||||| |||||| |||||| | ||||| | Sbjct 25733 TGAAGGACGACAGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCA 25674 Query 94019 AATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCC 94078 | || || |||||||| | | |||||| | | ||||| | || || ||||| Sbjct 25673 AGATGGCTGGTGGAATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTG 25614 Query 94079 GCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGG 94138 ||| ||||| || || ||||||||| || | || |||||||| |||||||||||| | | Sbjct 25613 CCGGCACCAACGGTACATCCAACGGCATCATTCCCATGCTCCGCGTCTTCAACAACACTG 25554 Query 94139 CGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGC 94198 | | ||||| |||||||| ||| | | | ||| | || || |||| ||||||| Sbjct 25553 CCAGATACGTTGACCAGGGCGGTAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGC 25494 Query 94199 CCTGGCACGCGGACGTGCAGG-CTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTG 94257 | |||||||| |||||| | ||||| | || |||||||||||||||| || || Sbjct 25493 CTTGGCACGCAGACGTGTTCGACTTTCTT-GATTTGCGAAAGAACCACGGTAAGGAAGAA 25435 Query 94258 GAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTC 94317 | | || | ||||||||| ||||| ||| | ||||| || || ||||| |||||| Sbjct 25434 AACCGTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTC 25375 Query 94318 GAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTT 94377 || || ||| | |||| || | |||||||| || || || || ||| | || | Sbjct 25374 GAAAAGAACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGA---T 25318 Query 94378 TGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCG---------CAGGGCAAG 94428 || || || || || || | |||| |||||| | ||||| Sbjct 25317 TG-CTATGGC-----GAGGAATTTGAGGCTCTCTACGAAAAGTATGAGCGTGAGGGCCGT 25264 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | | | ||| ||| ||| |||||| ||| | |||| | || ||| || Sbjct 25263 GGCCGCAAGACTATTCGTGCCCAGAAGCTCTGGTACTCGATCCTCGAGTCCCAGACCGAA 25204 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 ||||| | |||| || ||| |||||| | |||| ||| ||||||| || || Sbjct 25203 ACGGGCAACCCCTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAAC 25144 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || || || ||||| || |||||||| ||||| | ||||| | | || || Sbjct 25143 CTGGGAACCATTCGCAGCTCCAACCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGAT 25084 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668 ||| ||||||| || ||| ||| ||| | |||| | | ||||| ||| |||| Sbjct 25083 GAGGTTGCTGTTTGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGT-CGA-----CTAC 25030 Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTG 94728 | | || | | ||| | || |||| | || | | | | ||| Sbjct 25029 A--AAGAAGGCCGC-TACGACTTTCAGAAGCTCCACGAGGTCACTCAAGTGGTCGTCCGT 24973 Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788 ||||| |||| | | || || ||| |||||| | |||||| ||| ||| Sbjct 24972 AACCTCAACAAGATCATTGATGTCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAAC 24913 Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848 || ||||| |||||||| | || || |||||| | || ||||| | | || Sbjct 24912 ATGCGACATCGACCCATCGGTGTTGGTGTTCAGGGTCTTGCTGACGCTTTTCTTGCTCTG 24853 Query 94849 CGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATT 94908 || |||||| ||| ||| ||| || | | || | | || ||||| | ||| Sbjct 24852 CGCATGCCCTTCGAGTCTCCCGAGGCCCGTGAGCTCAACAAGCAGATCTTCGAGACCATC 24793 Query 94909 TATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAA 94968 || ||| || ||| | || | | |||||| | | | ||| || || Sbjct 24792 TACCACGCTGCACTGACAGCCTCTCTTGAGCTGGCCAAAGAGCAAGGC---CCCTACTCT 24736 Query 94969 TCGTTCCGCGGATCGC---CCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTG 95025 | ||| || || | ||| |||| || ||| |||| |||||| | ||| ||| Sbjct 24735 ACCTTCAAGGGCTCTCCCGCCTCGGAA---GGTATTCTTCAATTCGACATGTGGAATGTC 24679 Query 95026 AAGCCCTCGGGTCTGTACGACTGGG--AAGCTCTACGCGCTGATGTTATCAAACACGGTG 95083 ||||| || | | | || |||| || || | | || || | | | |||||| Sbjct 24678 AAGCCTTCTGAGTTATGGGAGTGGGACAATCTGAAGGAGCAGA--TCAAGGAGCACGGTA 24621 Query 95084 TGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCA 95143 | ||| || |||| | || ||||||||||| ||||| || |||| || || || | Sbjct 24620 TTCGCAACTCGTTGCTGCTCGCTCCCATGCCCACCGCCTCGACCTCGCAAATTCTGGGTA 24561 Query 95144 ACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGG 95203 |||| |||| || || || | ||| |||||| | ||| | | || || | || || | Sbjct 24560 ACAATGAGTGCTTTGAGCCATACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTG 24501 Query 95204 AATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGT 95262 |||||| ||| ||||| ||||| ||| || | || | ||||| | ||| | Sbjct 24500 AATTCCAGGTCGTCAACCCCTGGCTCCTCAAGGATCTCGTCGAC-ATGGGTCTCTGGTCT 24442 Query 95263 GACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATA 95322 || | ||||||| | | || || || ||| | ||||||||||| | || Sbjct 24441 GATGCCATGAAGAACCGCATCATTGCCGAGAATGGTTCCATTCAGAACATCCCCAATATC 24382 Query 95323 CCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG-CGTGATACT 95381 || | ||||||||||| ||||| ||||| || |||||||| | ||||| | || || | Sbjct 24381 CCCGCCGACATCAAGGCTCTCTATAAGACTGTTTGGGAGATTTCTCAGCGTCATGTTA-T 24323 Query 95382 CGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 | | || |||| ||||| |||| ||| |||| Sbjct 24322 CCAGATGGCCGCCGATCGCGGTGCCTTTATCGACCAG 24286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494710250620240