Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq315 179 4e-40 seq104 116 4e-21 seq13 87.8 2e-12 >seq315 Length=31375 Score = 179 bits (198), Expect = 4e-40 Identities = 731/1138 (64%), Gaps = 27/1138 (2%) Strand=Plus/Plus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || || || || ||||| || || | | || | ||| ||| | | Sbjct 24483 GGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATG 24542 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | |||||| | || || || || || ||||| | || | ||||| |||||| || | Sbjct 24543 GCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTCGAGGCGGTGGGCATGGGAGCGA 24602 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 || ||| || || || | |||||| | || | ||||||| | ||| |||| Sbjct 24603 GCAGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCC 24662 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT--CGACTGGCGGG 153265 | | | | || || | | |||||||||||| | || | | ||| ||| |||||| Sbjct 24663 ATAACTCAGAAGGCTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGA--GGCGGG 24720 Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCG-A 153324 | ||| || ||| |||| ||| | || |||||| || || || || | Sbjct 24721 AGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTCA 24779 Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGA--ACGGCCGCTTCTTCGCT 153382 | || | | ||| ||||| ||| ||| || || ||||| |||| || || Sbjct 24780 GTGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGG--GCCTCGGGAGA 24837 Query 153383 CTCGTACGGCATGCGCAGCAGC-ACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGA 153441 |||| | ||||||||||| ||| | ||| ||||| || |||||||| | ||| || |||| Sbjct 24838 CTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGA 24896 Query 153442 TGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGA 153501 |||||||||| | ||||||| | || | | ||||| || || ||| ||| | Sbjct 24897 TGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAA 24956 Query 153502 TAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCAT 153561 | || ||||||||||| || || ||||||| ||| | | | | || |||| || || | Sbjct 24957 TGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGAAAGTCGT 25016 Query 153562 AG-GTCAT--TTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGA 153618 || | | | || || | || ||| | | || ||||| ||| |||| || || | Sbjct 25017 AGCGGCCTTCTTTGTAGTCG---ACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAA 25073 Query 153619 CGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTA 153678 | || ||| || | | | | ||||| | |||||| | ||| |||||| || | Sbjct 25074 CAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAA 25133 Query 153679 TGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACG 153738 || |||| || | ||| ||||| || | ||||| || || ||| | ||||| | | Sbjct 25134 TGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGG 25193 Query 153739 GTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGCACCC 153798 | ||| || ||| || | |||| ||| | || | ||| || || | Sbjct 25194 GGTTGCCCGTTTCGGTCTGGGACTCGAGGATCGAGTACCAGAGCTTCTGGGCACGAATAG 25253 Query 153799 GCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGT 153858 || || |||||||| | ||| || ||||| || |||||| || ||||| | Sbjct 25254 TCTTGCGGCCACGGCCCTCACGCTCATACTTTTCGTAGAGAGCCTCAAATTCCTCGCCAT 25313 Query 153859 AGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGT 153918 |||| || || ||||| || |||| | |||||||| || | ||| ||| || | Sbjct 25314 AGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCA---ATCCCCGTTCT 25370 Query 153919 T---GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCT 153975 | |||||| |||||| ||||| || | ||| || || | ||||||||| || Sbjct 25371 TTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCAC 25430 Query 153976 TGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCC 154035 | || ||| || ||| | || || || | | | | ||| ||||||| Sbjct 25431 GGTTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCC 25490 Query 154036 AGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGC 154092 | || || | ||||| ||| | ||||| ||| || |||||||| || |||| | Sbjct 25491 AAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATC 25550 Query 154093 GCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT 154150 | | |||||||||||||| | |||||| | |||| | | || |||||||| Sbjct 25551 TGGCAGTGTTGTTGAAGACGCGGAGCATGGGAATGATGCCGTTGGATGTACCGTTGGT 25608 >seq104 Length=76965 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| ||||| |||||||| || ||||| | | | Sbjct 66866 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGGCCATCCTCGAGCTGCTTACCAGCAAA 66807 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| || || || |||||||| || || || || ||||| ||| || || | ||| Sbjct 66806 GATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 66747 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 || | | |||||||| ||||||||||| | || | || || || || || ||||| | Sbjct 66746 GT-CGATGGTGTCGGAAGACTCCACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGA 66688 Query 138602 CAAAAATCTGCAT 138614 | ||||||||||| Sbjct 66687 CGAAAATCTGCAT 66675 >seq13 Length=187677 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | || | ||| | || | | |||||||||| || ||||||||||| Sbjct 67662 GCCACCTCGAAGGCGAAGAACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGA 67603 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || |||||| || || || || | |||| |||||||| ||||| || || Sbjct 67602 AAGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCAGGGGG 67543 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || || || ||||| ||| | || | || |||| || | ||| || | |||||| Sbjct 67542 GATTCCCTCCTTGTC-CTGAATCTTCGACTTGACATTG-TCAATGGTATCAGACGACTCG 67485 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||||| || | || || || || || || || || || || |||||| Sbjct 67484 ACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 67434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496249410331680